miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 3' -65.5 NC_001798.1 + 1491 0.66 0.48418
Target:  5'- cAUGGCgucgcccgcgCCCGAGGcGGcGGCCCGgCCGu -3'
miRNA:   3'- cUACCG----------GGGCUCCaCCcCCGGGU-GGU- -5'
5134 3' -65.5 NC_001798.1 + 2083 0.68 0.366806
Target:  5'- --cGGCggaccacUCCG-GG-GGGGGCCCGCCc -3'
miRNA:   3'- cuaCCG-------GGGCuCCaCCCCCGGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 2569 0.68 0.367567
Target:  5'- --cGGCCgCGGGGcgGGGGGCguCCGCgCGg -3'
miRNA:   3'- cuaCCGGgGCUCCa-CCCCCG--GGUG-GU- -5'
5134 3' -65.5 NC_001798.1 + 2998 0.7 0.25403
Target:  5'- cGcgGGCCCCGGGcGcGGGGGCgCGgCGg -3'
miRNA:   3'- -CuaCCGGGGCUC-CaCCCCCGgGUgGU- -5'
5134 3' -65.5 NC_001798.1 + 3556 0.67 0.41518
Target:  5'- cAUGGCguaCCCcAGGUGGGGcacgGCCCgcGCCAc -3'
miRNA:   3'- cUACCG---GGGcUCCACCCC----CGGG--UGGU- -5'
5134 3' -65.5 NC_001798.1 + 3885 0.78 0.075719
Target:  5'- --cGcGCCCCGGGGgcgGGGGGCCgGCCc -3'
miRNA:   3'- cuaC-CGGGGCUCCa--CCCCCGGgUGGu -5'
5134 3' -65.5 NC_001798.1 + 14130 0.67 0.440363
Target:  5'- --gGGCgaUGGGGUGGGGGCaagGCCAg -3'
miRNA:   3'- cuaCCGggGCUCCACCCCCGgg-UGGU- -5'
5134 3' -65.5 NC_001798.1 + 15942 0.67 0.423477
Target:  5'- --gGGCCCCGGGGgcccaaugGGGcGGCagACCc -3'
miRNA:   3'- cuaCCGGGGCUCCa-------CCC-CCGggUGGu -5'
5134 3' -65.5 NC_001798.1 + 16117 0.67 0.43951
Target:  5'- --aGGCcacgaaaCCCGGGGuUGGGGGCggaaUACCAu -3'
miRNA:   3'- cuaCCG-------GGGCUCC-ACCCCCGg---GUGGU- -5'
5134 3' -65.5 NC_001798.1 + 18019 0.69 0.330854
Target:  5'- -cUGGCUCCGGGcaGGGGGgCgGCCGa -3'
miRNA:   3'- cuACCGGGGCUCcaCCCCCgGgUGGU- -5'
5134 3' -65.5 NC_001798.1 + 23572 0.68 0.375238
Target:  5'- --gGGCCCCGGGG-GcGGcGCCCcgGCCGa -3'
miRNA:   3'- cuaCCGGGGCUCCaCcCC-CGGG--UGGU- -5'
5134 3' -65.5 NC_001798.1 + 25670 0.68 0.367567
Target:  5'- --cGGCCCUG-GGcaaccggcucUGcGGGCCCGCCAc -3'
miRNA:   3'- cuaCCGGGGCuCC----------ACcCCCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 25924 0.67 0.398891
Target:  5'- -cUGGCCUgCGAGGUGcu-GCCCGCCGg -3'
miRNA:   3'- cuACCGGG-GCUCCACcccCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 26534 0.66 0.448949
Target:  5'- --cGGCgUgGAGGUGGuGGGgaCCGCCGc -3'
miRNA:   3'- cuaCCGgGgCUCCACC-CCCg-GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 27585 0.66 0.445503
Target:  5'- --cGGCUCCGGGGgagggacggggaaGGGGGCgCGCgGg -3'
miRNA:   3'- cuaCCGGGGCUCCa------------CCCCCGgGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 29486 0.69 0.330854
Target:  5'- -uUGGuCCCCGGGGacGGGGCCgCcCCGa -3'
miRNA:   3'- cuACC-GGGGCUCCacCCCCGG-GuGGU- -5'
5134 3' -65.5 NC_001798.1 + 31538 0.77 0.090304
Target:  5'- --gGGCCCCGGGGgGGGaGGUCUGCCAc -3'
miRNA:   3'- cuaCCGGGGCUCCaCCC-CCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 31969 0.7 0.277878
Target:  5'- ---cGCCCCccagGGGGUGGGGGCCaagagggcggCGCCGc -3'
miRNA:   3'- cuacCGGGG----CUCCACCCCCGG----------GUGGU- -5'
5134 3' -65.5 NC_001798.1 + 32368 0.74 0.140932
Target:  5'- --cGGCCCCGAGcccGGGGCCCGCg- -3'
miRNA:   3'- cuaCCGGGGCUCcacCCCCGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 34810 0.76 0.110506
Target:  5'- --gGGCCCCGGGGcccccgcgcuccgccGGGGGCCCggGCCGg -3'
miRNA:   3'- cuaCCGGGGCUCCa--------------CCCCCGGG--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.