miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 3' -65.5 NC_001798.1 + 152239 0.68 0.383016
Target:  5'- --cGGCCgCuCGGGGccGGGGUCCGCCc -3'
miRNA:   3'- cuaCCGG-G-GCUCCacCCCCGGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 152167 0.66 0.466392
Target:  5'- gGGUGG-UCCGGGGaaaaggGGGGGCCUgagACCc -3'
miRNA:   3'- -CUACCgGGGCUCCa-----CCCCCGGG---UGGu -5'
5134 3' -65.5 NC_001798.1 + 149673 0.66 0.466392
Target:  5'- cGcgGGCCCCGGGcucGGGG-CCGCCc -3'
miRNA:   3'- -CuaCCGGGGCUCcacCCCCgGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 148840 0.73 0.175065
Target:  5'- --aGGCCUCgGGGGUGGGGGCggcuucucgugcCCGCCc -3'
miRNA:   3'- cuaCCGGGG-CUCCACCCCCG------------GGUGGu -5'
5134 3' -65.5 NC_001798.1 + 147498 0.76 0.102317
Target:  5'- --aGGCUCCGGGGgggGGGGGCgCCugCGu -3'
miRNA:   3'- cuaCCGGGGCUCCa--CCCCCG-GGugGU- -5'
5134 3' -65.5 NC_001798.1 + 147237 0.72 0.187989
Target:  5'- cGggGGCCCCGGGGccccGGGCCgCGCCGg -3'
miRNA:   3'- -CuaCCGGGGCUCCacc-CCCGG-GUGGU- -5'
5134 3' -65.5 NC_001798.1 + 147036 0.75 0.12138
Target:  5'- -uUGGCCgCCGAGGUGcgccccggccggaGGGGCCC-CCGc -3'
miRNA:   3'- cuACCGG-GGCUCCAC-------------CCCCGGGuGGU- -5'
5134 3' -65.5 NC_001798.1 + 145634 0.67 0.440363
Target:  5'- ---cGCCCCGcccGGcagGGGGGCCCcggcGCCGc -3'
miRNA:   3'- cuacCGGGGCu--CCa--CCCCCGGG----UGGU- -5'
5134 3' -65.5 NC_001798.1 + 141204 0.67 0.406985
Target:  5'- --gGGCCCgCGGGacGGGGGCCCGg-- -3'
miRNA:   3'- cuaCCGGG-GCUCcaCCCCCGGGUggu -5'
5134 3' -65.5 NC_001798.1 + 134835 0.67 0.390901
Target:  5'- --gGGCCCggguuUGAGGUccggGGaGGGCCCGuCCAa -3'
miRNA:   3'- cuaCCGGG-----GCUCCA----CC-CCCGGGU-GGU- -5'
5134 3' -65.5 NC_001798.1 + 134341 0.67 0.410251
Target:  5'- -cUGGUCgUGAGGgucgaaagggcgucGuGGGGCCCGCCGg -3'
miRNA:   3'- cuACCGGgGCUCCa-------------C-CCCCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 132115 0.66 0.466392
Target:  5'- --gGGgCCCGAGGUccugcaGGcGGCCCugCGc -3'
miRNA:   3'- cuaCCgGGGCUCCA------CCcCCGGGugGU- -5'
5134 3' -65.5 NC_001798.1 + 131371 0.76 0.109959
Target:  5'- --cGGCCUCGGGGgauccccUGGGGGCCCGgCGu -3'
miRNA:   3'- cuaCCGGGGCUCC-------ACCCCCGGGUgGU- -5'
5134 3' -65.5 NC_001798.1 + 130538 1.07 0.000506
Target:  5'- cGAUGGCCCCGAGGUGGGGGCCCACCAa -3'
miRNA:   3'- -CUACCGGGGCUCCACCCCCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 130130 0.69 0.330854
Target:  5'- --cGGCCUCGuGGUcGGGGG-CCACUu -3'
miRNA:   3'- cuaCCGGGGCuCCA-CCCCCgGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 127338 0.67 0.390901
Target:  5'- cGUGGCCCCGAGccUGGGcGUCC-CCGu -3'
miRNA:   3'- cUACCGGGGCUCc-ACCCcCGGGuGGU- -5'
5134 3' -65.5 NC_001798.1 + 123418 0.69 0.330854
Target:  5'- --cGGCCCCGccGGGUcaccGGGGcGCCCcCCc -3'
miRNA:   3'- cuaCCGGGGC--UCCA----CCCC-CGGGuGGu -5'
5134 3' -65.5 NC_001798.1 + 121293 0.69 0.337976
Target:  5'- ---cGCCCCGAcGGUGGGGcGgCCGCgAa -3'
miRNA:   3'- cuacCGGGGCU-CCACCCC-CgGGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 119427 0.67 0.404545
Target:  5'- -cUGGCCCCGGcGGUucGGGuguguacguucgacGGCgCCGCCGu -3'
miRNA:   3'- cuACCGGGGCU-CCA--CCC--------------CCG-GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 109568 0.72 0.187989
Target:  5'- cGGUGGCCCCGAGc--GcGGCCCGCCu -3'
miRNA:   3'- -CUACCGGGGCUCcacCcCCGGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.