Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5134 | 3' | -65.5 | NC_001798.1 | + | 152239 | 0.68 | 0.383016 |
Target: 5'- --cGGCCgCuCGGGGccGGGGUCCGCCc -3' miRNA: 3'- cuaCCGG-G-GCUCCacCCCCGGGUGGu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 152167 | 0.66 | 0.466392 |
Target: 5'- gGGUGG-UCCGGGGaaaaggGGGGGCCUgagACCc -3' miRNA: 3'- -CUACCgGGGCUCCa-----CCCCCGGG---UGGu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 149673 | 0.66 | 0.466392 |
Target: 5'- cGcgGGCCCCGGGcucGGGG-CCGCCc -3' miRNA: 3'- -CuaCCGGGGCUCcacCCCCgGGUGGu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 148840 | 0.73 | 0.175065 |
Target: 5'- --aGGCCUCgGGGGUGGGGGCggcuucucgugcCCGCCc -3' miRNA: 3'- cuaCCGGGG-CUCCACCCCCG------------GGUGGu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 147498 | 0.76 | 0.102317 |
Target: 5'- --aGGCUCCGGGGgggGGGGGCgCCugCGu -3' miRNA: 3'- cuaCCGGGGCUCCa--CCCCCG-GGugGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 147237 | 0.72 | 0.187989 |
Target: 5'- cGggGGCCCCGGGGccccGGGCCgCGCCGg -3' miRNA: 3'- -CuaCCGGGGCUCCacc-CCCGG-GUGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 147036 | 0.75 | 0.12138 |
Target: 5'- -uUGGCCgCCGAGGUGcgccccggccggaGGGGCCC-CCGc -3' miRNA: 3'- cuACCGG-GGCUCCAC-------------CCCCGGGuGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 145634 | 0.67 | 0.440363 |
Target: 5'- ---cGCCCCGcccGGcagGGGGGCCCcggcGCCGc -3' miRNA: 3'- cuacCGGGGCu--CCa--CCCCCGGG----UGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 141204 | 0.67 | 0.406985 |
Target: 5'- --gGGCCCgCGGGacGGGGGCCCGg-- -3' miRNA: 3'- cuaCCGGG-GCUCcaCCCCCGGGUggu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 134835 | 0.67 | 0.390901 |
Target: 5'- --gGGCCCggguuUGAGGUccggGGaGGGCCCGuCCAa -3' miRNA: 3'- cuaCCGGG-----GCUCCA----CC-CCCGGGU-GGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 134341 | 0.67 | 0.410251 |
Target: 5'- -cUGGUCgUGAGGgucgaaagggcgucGuGGGGCCCGCCGg -3' miRNA: 3'- cuACCGGgGCUCCa-------------C-CCCCGGGUGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 132115 | 0.66 | 0.466392 |
Target: 5'- --gGGgCCCGAGGUccugcaGGcGGCCCugCGc -3' miRNA: 3'- cuaCCgGGGCUCCA------CCcCCGGGugGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 131371 | 0.76 | 0.109959 |
Target: 5'- --cGGCCUCGGGGgauccccUGGGGGCCCGgCGu -3' miRNA: 3'- cuaCCGGGGCUCC-------ACCCCCGGGUgGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 130538 | 1.07 | 0.000506 |
Target: 5'- cGAUGGCCCCGAGGUGGGGGCCCACCAa -3' miRNA: 3'- -CUACCGGGGCUCCACCCCCGGGUGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 130130 | 0.69 | 0.330854 |
Target: 5'- --cGGCCUCGuGGUcGGGGG-CCACUu -3' miRNA: 3'- cuaCCGGGGCuCCA-CCCCCgGGUGGu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 127338 | 0.67 | 0.390901 |
Target: 5'- cGUGGCCCCGAGccUGGGcGUCC-CCGu -3' miRNA: 3'- cUACCGGGGCUCc-ACCCcCGGGuGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 123418 | 0.69 | 0.330854 |
Target: 5'- --cGGCCCCGccGGGUcaccGGGGcGCCCcCCc -3' miRNA: 3'- cuaCCGGGGC--UCCA----CCCC-CGGGuGGu -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 121293 | 0.69 | 0.337976 |
Target: 5'- ---cGCCCCGAcGGUGGGGcGgCCGCgAa -3' miRNA: 3'- cuacCGGGGCU-CCACCCC-CgGGUGgU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 119427 | 0.67 | 0.404545 |
Target: 5'- -cUGGCCCCGGcGGUucGGGuguguacguucgacGGCgCCGCCGu -3' miRNA: 3'- cuACCGGGGCU-CCA--CCC--------------CCG-GGUGGU- -5' |
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5134 | 3' | -65.5 | NC_001798.1 | + | 109568 | 0.72 | 0.187989 |
Target: 5'- cGGUGGCCCCGAGc--GcGGCCCGCCu -3' miRNA: 3'- -CUACCGGGGCUCcacCcCCGGGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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