miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 3' -65.5 NC_001798.1 + 130538 1.07 0.000506
Target:  5'- cGAUGGCCCCGAGGUGGGGGCCCACCAa -3'
miRNA:   3'- -CUACCGGGGCUCCACCCCCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 34975 0.78 0.073829
Target:  5'- --cGGCCgCCGAGGUgcGGGGGCCCcuccgGCCGg -3'
miRNA:   3'- cuaCCGG-GGCUCCA--CCCCCGGG-----UGGU- -5'
5134 3' -65.5 NC_001798.1 + 3885 0.78 0.075719
Target:  5'- --cGcGCCCCGGGGgcgGGGGGCCgGCCc -3'
miRNA:   3'- cuaC-CGGGGCUCCa--CCCCCGGgUGGu -5'
5134 3' -65.5 NC_001798.1 + 31538 0.77 0.090304
Target:  5'- --gGGCCCCGGGGgGGGaGGUCUGCCAc -3'
miRNA:   3'- cuaCCGGGGCUCCaCCC-CCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 147498 0.76 0.102317
Target:  5'- --aGGCUCCGGGGgggGGGGGCgCCugCGu -3'
miRNA:   3'- cuaCCGGGGCUCCa--CCCCCG-GGugGU- -5'
5134 3' -65.5 NC_001798.1 + 131371 0.76 0.109959
Target:  5'- --cGGCCUCGGGGgauccccUGGGGGCCCGgCGu -3'
miRNA:   3'- cuaCCGGGGCUCC-------ACCCCCGGGUgGU- -5'
5134 3' -65.5 NC_001798.1 + 34810 0.76 0.110506
Target:  5'- --gGGCCCCGGGGcccccgcgcuccgccGGGGGCCCggGCCGg -3'
miRNA:   3'- cuaCCGGGGCUCCa--------------CCCCCGGG--UGGU- -5'
5134 3' -65.5 NC_001798.1 + 147036 0.75 0.12138
Target:  5'- -uUGGCCgCCGAGGUGcgccccggccggaGGGGCCC-CCGc -3'
miRNA:   3'- cuACCGG-GGCUCCAC-------------CCCCGGGuGGU- -5'
5134 3' -65.5 NC_001798.1 + 32368 0.74 0.140932
Target:  5'- --cGGCCCCGAGcccGGGGCCCGCg- -3'
miRNA:   3'- cuaCCGGGGCUCcacCCCCGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 74855 0.74 0.153046
Target:  5'- uGcgGGUCCUgGAGGUGGGGGCagugccggugggucgCCACCGg -3'
miRNA:   3'- -CuaCCGGGG-CUCCACCCCCG---------------GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 95572 0.73 0.166895
Target:  5'- aGGUGGCCCaCGAGGcGGaGGCCCuggucaGCCAg -3'
miRNA:   3'- -CUACCGGG-GCUCCaCCcCCGGG------UGGU- -5'
5134 3' -65.5 NC_001798.1 + 148840 0.73 0.175065
Target:  5'- --aGGCCUCgGGGGUGGGGGCggcuucucgugcCCGCCc -3'
miRNA:   3'- cuaCCGGGG-CUCCACCCCCG------------GGUGGu -5'
5134 3' -65.5 NC_001798.1 + 147237 0.72 0.187989
Target:  5'- cGggGGCCCCGGGGccccGGGCCgCGCCGg -3'
miRNA:   3'- -CuaCCGGGGCUCCacc-CCCGG-GUGGU- -5'
5134 3' -65.5 NC_001798.1 + 109568 0.72 0.187989
Target:  5'- cGGUGGCCCCGAGc--GcGGCCCGCCu -3'
miRNA:   3'- -CUACCGGGGCUCcacCcCCGGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 95018 0.72 0.19248
Target:  5'- cGcgGGCCUgGAGGccGGGGCCCGCg- -3'
miRNA:   3'- -CuaCCGGGgCUCCacCCCCGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 74652 0.71 0.237267
Target:  5'- --aGGCCCCccGGGG-GGccucGGGCCCACCc -3'
miRNA:   3'- cuaCCGGGG--CUCCaCC----CCCGGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 77357 0.71 0.242749
Target:  5'- -cUGGCCCUgGAGGcgcGGGGGgCCAUCGa -3'
miRNA:   3'- cuACCGGGG-CUCCa--CCCCCgGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 57433 0.71 0.248336
Target:  5'- --gGGCUCCGAGGaugucuucGGGGGCCCGg-- -3'
miRNA:   3'- cuaCCGGGGCUCCa-------CCCCCGGGUggu -5'
5134 3' -65.5 NC_001798.1 + 2998 0.7 0.25403
Target:  5'- cGcgGGCCCCGGGcGcGGGGGCgCGgCGg -3'
miRNA:   3'- -CuaCCGGGGCUC-CaCCCCCGgGUgGU- -5'
5134 3' -65.5 NC_001798.1 + 31969 0.7 0.277878
Target:  5'- ---cGCCCCccagGGGGUGGGGGCCaagagggcggCGCCGc -3'
miRNA:   3'- cuacCGGGG----CUCCACCCCCGG----------GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.