miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 3' -65.5 NC_001798.1 + 91232 0.66 0.493195
Target:  5'- --cGGUCUgagCGAGGUGGGGGUuguagaaguuCUGCCGg -3'
miRNA:   3'- cuaCCGGG---GCUCCACCCCCG----------GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 27585 0.66 0.445503
Target:  5'- --cGGCUCCGGGGgagggacggggaaGGGGGCgCGCgGg -3'
miRNA:   3'- cuaCCGGGGCUCCa------------CCCCCGgGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 26534 0.66 0.448949
Target:  5'- --cGGCgUgGAGGUGGuGGGgaCCGCCGc -3'
miRNA:   3'- cuaCCGgGgCUCCACC-CCCg-GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 152167 0.66 0.466392
Target:  5'- gGGUGG-UCCGGGGaaaaggGGGGGCCUgagACCc -3'
miRNA:   3'- -CUACCgGGGCUCCa-----CCCCCGGG---UGGu -5'
5134 3' -65.5 NC_001798.1 + 132115 0.66 0.466392
Target:  5'- --gGGgCCCGAGGUccugcaGGcGGCCCugCGc -3'
miRNA:   3'- cuaCCgGGGCUCCA------CCcCCGGGugGU- -5'
5134 3' -65.5 NC_001798.1 + 149673 0.66 0.466392
Target:  5'- cGcgGGCCCCGGGcucGGGG-CCGCCc -3'
miRNA:   3'- -CuaCCGGGGCUCcacCCCCgGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 44492 0.66 0.475244
Target:  5'- gGGUGcGCCCUuucGGGUGGuGGGUCaCGCCc -3'
miRNA:   3'- -CUAC-CGGGGc--UCCACC-CCCGG-GUGGu -5'
5134 3' -65.5 NC_001798.1 + 59807 0.66 0.475244
Target:  5'- -cUGGCCCuCGAGGccuucuucuucUGGGGcgccgcggucGCCCGCg- -3'
miRNA:   3'- cuACCGGG-GCUCC-----------ACCCC----------CGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 102428 0.66 0.475244
Target:  5'- --gGGCCuCCaGGGGacuGGGGCCCGCgAa -3'
miRNA:   3'- cuaCCGG-GG-CUCCac-CCCCGGGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 98636 0.66 0.483283
Target:  5'- cGUGGCCgCGAccgucgcGGcgaacGGGGGuCCCGCCu -3'
miRNA:   3'- cUACCGGgGCU-------CCa----CCCCC-GGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 95317 0.66 0.48418
Target:  5'- --cGaGUCUCGGGG-GcGGGGCCCACgAg -3'
miRNA:   3'- cuaC-CGGGGCUCCaC-CCCCGGGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 1491 0.66 0.48418
Target:  5'- cAUGGCgucgcccgcgCCCGAGGcGGcGGCCCGgCCGu -3'
miRNA:   3'- cUACCG----------GGGCUCCaCCcCCGGGU-GGU- -5'
5134 3' -65.5 NC_001798.1 + 52631 0.66 0.48418
Target:  5'- --cGGcCCCCGAGGUGGGcacGUaCACCc -3'
miRNA:   3'- cuaCC-GGGGCUCCACCCc--CGgGUGGu -5'
5134 3' -65.5 NC_001798.1 + 73247 0.66 0.48418
Target:  5'- cGggGGcCCCCGGGGaccUGGaGGCCCaagauGCCGg -3'
miRNA:   3'- -CuaCC-GGGGCUCC---ACCcCCGGG-----UGGU- -5'
5134 3' -65.5 NC_001798.1 + 15942 0.67 0.423477
Target:  5'- --gGGCCCCGGGGgcccaaugGGGcGGCagACCc -3'
miRNA:   3'- cuaCCGGGGCUCCa-------CCC-CCGggUGGu -5'
5134 3' -65.5 NC_001798.1 + 71386 0.67 0.426823
Target:  5'- --cGGCCCUgGAGGgguuuuugguggcgGGGGuGCCCGCgCGg -3'
miRNA:   3'- cuaCCGGGG-CUCCa-------------CCCC-CGGGUG-GU- -5'
5134 3' -65.5 NC_001798.1 + 16117 0.67 0.43951
Target:  5'- --aGGCcacgaaaCCCGGGGuUGGGGGCggaaUACCAu -3'
miRNA:   3'- cuaCCG-------GGGCUCC-ACCCCCGg---GUGGU- -5'
5134 3' -65.5 NC_001798.1 + 85280 0.67 0.440363
Target:  5'- --aGGCUUCGGGGgggcGGGGGCcgggguCCGCCc -3'
miRNA:   3'- cuaCCGGGGCUCCa---CCCCCG------GGUGGu -5'
5134 3' -65.5 NC_001798.1 + 14130 0.67 0.440363
Target:  5'- --gGGCgaUGGGGUGGGGGCaagGCCAg -3'
miRNA:   3'- cuaCCGggGCUCCACCCCCGgg-UGGU- -5'
5134 3' -65.5 NC_001798.1 + 59147 0.67 0.41518
Target:  5'- cGAUGGCaCCCacgcaggcGAGGcGGGGGCgC-CCGu -3'
miRNA:   3'- -CUACCG-GGG--------CUCCaCCCCCGgGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.