miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 3' -65.5 NC_001798.1 + 108478 0.68 0.360005
Target:  5'- cGAgcuCCCCGAGGc-GGGGCCCACg- -3'
miRNA:   3'- -CUaccGGGGCUCCacCCCCGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 106804 0.68 0.345208
Target:  5'- --cGGaCCCCacGGGGUGGGGaagaCCACCAc -3'
miRNA:   3'- cuaCC-GGGG--CUCCACCCCcg--GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 102428 0.66 0.475244
Target:  5'- --gGGCCuCCaGGGGacuGGGGCCCGCgAa -3'
miRNA:   3'- cuaCCGG-GG-CUCCac-CCCCGGGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 98636 0.66 0.483283
Target:  5'- cGUGGCCgCGAccgucgcGGcgaacGGGGGuCCCGCCu -3'
miRNA:   3'- cUACCGGgGCU-------CCa----CCCCC-GGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 95572 0.73 0.166895
Target:  5'- aGGUGGCCCaCGAGGcGGaGGCCCuggucaGCCAg -3'
miRNA:   3'- -CUACCGGG-GCUCCaCCcCCGGG------UGGU- -5'
5134 3' -65.5 NC_001798.1 + 95317 0.66 0.48418
Target:  5'- --cGaGUCUCGGGG-GcGGGGCCCACgAg -3'
miRNA:   3'- cuaC-CGGGGCUCCaC-CCCCGGGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 95018 0.72 0.19248
Target:  5'- cGcgGGCCUgGAGGccGGGGCCCGCg- -3'
miRNA:   3'- -CuaCCGGGgCUCCacCCCCGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 91292 0.7 0.288543
Target:  5'- gGGUGGCucCCCGGGGguugugGGGGGCaaaaaacccagacgCCGCCc -3'
miRNA:   3'- -CUACCG--GGGCUCCa-----CCCCCG--------------GGUGGu -5'
5134 3' -65.5 NC_001798.1 + 91232 0.66 0.493195
Target:  5'- --cGGUCUgagCGAGGUGGGGGUuguagaaguuCUGCCGg -3'
miRNA:   3'- cuaCCGGG---GCUCCACCCCCG----------GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 85280 0.67 0.440363
Target:  5'- --aGGCUUCGGGGgggcGGGGGCcgggguCCGCCc -3'
miRNA:   3'- cuaCCGGGGCUCCa---CCCCCG------GGUGGu -5'
5134 3' -65.5 NC_001798.1 + 77357 0.71 0.242749
Target:  5'- -cUGGCCCUgGAGGcgcGGGGGgCCAUCGa -3'
miRNA:   3'- cuACCGGGG-CUCCa--CCCCCgGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 76037 0.69 0.317628
Target:  5'- --gGGCCCCGAGGccauccaggcgcggcUGGaGgacgugcggauccaGGCCCGCCGg -3'
miRNA:   3'- cuaCCGGGGCUCC---------------ACC-C--------------CCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 75301 0.68 0.370622
Target:  5'- -cUGGCCCgCGAGGUGGccgcguguucgcaGCUCACCAu -3'
miRNA:   3'- cuACCGGG-GCUCCACCcc-----------CGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 74855 0.74 0.153046
Target:  5'- uGcgGGUCCUgGAGGUGGGGGCagugccggugggucgCCACCGg -3'
miRNA:   3'- -CuaCCGGGG-CUCCACCCCCG---------------GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 74652 0.71 0.237267
Target:  5'- --aGGCCCCccGGGG-GGccucGGGCCCACCc -3'
miRNA:   3'- cuaCCGGGG--CUCCaCC----CCCGGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 73247 0.66 0.48418
Target:  5'- cGggGGcCCCCGGGGaccUGGaGGCCCaagauGCCGg -3'
miRNA:   3'- -CuaCC-GGGGCUCC---ACCcCCGGG-----UGGU- -5'
5134 3' -65.5 NC_001798.1 + 71386 0.67 0.426823
Target:  5'- --cGGCCCUgGAGGgguuuuugguggcgGGGGuGCCCGCgCGg -3'
miRNA:   3'- cuaCCGGGG-CUCCa-------------CCCC-CGGGUG-GU- -5'
5134 3' -65.5 NC_001798.1 + 65846 0.69 0.333689
Target:  5'- uGAUGGCCCgGAggguggccugguaguGGUggccuGGGGGUUUACCAg -3'
miRNA:   3'- -CUACCGGGgCU---------------CCA-----CCCCCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 59807 0.66 0.475244
Target:  5'- -cUGGCCCuCGAGGccuucuucuucUGGGGcgccgcggucGCCCGCg- -3'
miRNA:   3'- cuACCGGG-GCUCC-----------ACCCC----------CGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 59147 0.67 0.41518
Target:  5'- cGAUGGCaCCCacgcaggcGAGGcGGGGGCgC-CCGu -3'
miRNA:   3'- -CUACCG-GGG--------CUCCaCCCCCGgGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.