miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 3' -65.5 NC_001798.1 + 59147 0.67 0.41518
Target:  5'- cGAUGGCaCCCacgcaggcGAGGcGGGGGCgC-CCGu -3'
miRNA:   3'- -CUACCG-GGG--------CUCCaCCCCCGgGuGGU- -5'
5134 3' -65.5 NC_001798.1 + 3556 0.67 0.41518
Target:  5'- cAUGGCguaCCCcAGGUGGGGcacgGCCCgcGCCAc -3'
miRNA:   3'- cUACCG---GGGcUCCACCCC----CGGG--UGGU- -5'
5134 3' -65.5 NC_001798.1 + 134341 0.67 0.410251
Target:  5'- -cUGGUCgUGAGGgucgaaagggcgucGuGGGGCCCGCCGg -3'
miRNA:   3'- cuACCGGgGCUCCa-------------C-CCCCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 141204 0.67 0.406985
Target:  5'- --gGGCCCgCGGGacGGGGGCCCGg-- -3'
miRNA:   3'- cuaCCGGG-GCUCcaCCCCCGGGUggu -5'
5134 3' -65.5 NC_001798.1 + 119427 0.67 0.404545
Target:  5'- -cUGGCCCCGGcGGUucGGGuguguacguucgacGGCgCCGCCGu -3'
miRNA:   3'- cuACCGGGGCU-CCA--CCC--------------CCG-GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 25924 0.67 0.398891
Target:  5'- -cUGGCCUgCGAGGUGcu-GCCCGCCGg -3'
miRNA:   3'- cuACCGGG-GCUCCACcccCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 134835 0.67 0.390901
Target:  5'- --gGGCCCggguuUGAGGUccggGGaGGGCCCGuCCAa -3'
miRNA:   3'- cuaCCGGG-----GCUCCA----CC-CCCGGGU-GGU- -5'
5134 3' -65.5 NC_001798.1 + 127338 0.67 0.390901
Target:  5'- cGUGGCCCCGAGccUGGGcGUCC-CCGu -3'
miRNA:   3'- cUACCGGGGCUCc-ACCCcCGGGuGGU- -5'
5134 3' -65.5 NC_001798.1 + 152239 0.68 0.383016
Target:  5'- --cGGCCgCuCGGGGccGGGGUCCGCCc -3'
miRNA:   3'- cuaCCGG-G-GCUCCacCCCCGGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 52232 0.68 0.383016
Target:  5'- aGUGGCuCUCGGuGGUcguGGGGGCgCGCCu -3'
miRNA:   3'- cUACCG-GGGCU-CCA---CCCCCGgGUGGu -5'
5134 3' -65.5 NC_001798.1 + 23572 0.68 0.375238
Target:  5'- --gGGCCCCGGGG-GcGGcGCCCcgGCCGa -3'
miRNA:   3'- cuaCCGGGGCUCCaCcCC-CGGG--UGGU- -5'
5134 3' -65.5 NC_001798.1 + 75301 0.68 0.370622
Target:  5'- -cUGGCCCgCGAGGUGGccgcguguucgcaGCUCACCAu -3'
miRNA:   3'- cuACCGGG-GCUCCACCcc-----------CGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 2569 0.68 0.367567
Target:  5'- --cGGCCgCGGGGcgGGGGGCguCCGCgCGg -3'
miRNA:   3'- cuaCCGGgGCUCCa-CCCCCG--GGUG-GU- -5'
5134 3' -65.5 NC_001798.1 + 25670 0.68 0.367567
Target:  5'- --cGGCCCUG-GGcaaccggcucUGcGGGCCCGCCAc -3'
miRNA:   3'- cuaCCGGGGCuCC----------ACcCCCGGGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 2083 0.68 0.366806
Target:  5'- --cGGCggaccacUCCG-GG-GGGGGCCCGCCc -3'
miRNA:   3'- cuaCCG-------GGGCuCCaCCCCCGGGUGGu -5'
5134 3' -65.5 NC_001798.1 + 108478 0.68 0.360005
Target:  5'- cGAgcuCCCCGAGGc-GGGGCCCACg- -3'
miRNA:   3'- -CUaccGGGGCUCCacCCCCGGGUGgu -5'
5134 3' -65.5 NC_001798.1 + 36267 0.68 0.352552
Target:  5'- uGUGGaCCCCGGGGUGGGcGGCggggggggguGCCGu -3'
miRNA:   3'- cUACC-GGGGCUCCACCC-CCGgg--------UGGU- -5'
5134 3' -65.5 NC_001798.1 + 106804 0.68 0.345208
Target:  5'- --cGGaCCCCacGGGGUGGGGaagaCCACCAc -3'
miRNA:   3'- cuaCC-GGGG--CUCCACCCCcg--GGUGGU- -5'
5134 3' -65.5 NC_001798.1 + 121293 0.69 0.337976
Target:  5'- ---cGCCCCGAcGGUGGGGcGgCCGCgAa -3'
miRNA:   3'- cuacCGGGGCU-CCACCCC-CgGGUGgU- -5'
5134 3' -65.5 NC_001798.1 + 65846 0.69 0.333689
Target:  5'- uGAUGGCCCgGAggguggccugguaguGGUggccuGGGGGUUUACCAg -3'
miRNA:   3'- -CUACCGGGgCU---------------CCA-----CCCCCGGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.