miRNA display CGI


Results 61 - 73 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5135 5' -55.9 NC_001798.1 + 109253 0.67 0.89074
Target:  5'- cGGGGC-UGCUCGCcucgucGGGGUUUgCg -3'
miRNA:   3'- -CCCUGuGCGAGCGcauc--CCCCAAAgG- -5'
5135 5' -55.9 NC_001798.1 + 61827 0.67 0.89074
Target:  5'- cGGGCACGCcuUCGCcccGGGGGa--CCg -3'
miRNA:   3'- cCCUGUGCG--AGCGcauCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 38931 0.67 0.897255
Target:  5'- aGGGGCGCaggCGCGUGGcGaGGuUUUCCa -3'
miRNA:   3'- -CCCUGUGcgaGCGCAUC-C-CCcAAAGG- -5'
5135 5' -55.9 NC_001798.1 + 5249 0.67 0.897255
Target:  5'- cGGGGCGCGCg-GgGcGGGGGGa---- -3'
miRNA:   3'- -CCCUGUGCGagCgCaUCCCCCaaagg -5'
5135 5' -55.9 NC_001798.1 + 27262 0.67 0.897255
Target:  5'- cGGGAC-CGCagccccguggCGCGcGGGGGGgaggggcugCCg -3'
miRNA:   3'- -CCCUGuGCGa---------GCGCaUCCCCCaaa------GG- -5'
5135 5' -55.9 NC_001798.1 + 144545 0.67 0.897255
Target:  5'- gGGGAgAC-C-CGcCGUGGGGGGgcgUUCg -3'
miRNA:   3'- -CCCUgUGcGaGC-GCAUCCCCCa--AAGg -5'
5135 5' -55.9 NC_001798.1 + 98541 0.67 0.903546
Target:  5'- gGGGGCuugauuugcGCGCUgGuCGUGGGGgcgcuGGUggCCg -3'
miRNA:   3'- -CCCUG---------UGCGAgC-GCAUCCC-----CCAaaGG- -5'
5135 5' -55.9 NC_001798.1 + 36519 0.67 0.907211
Target:  5'- gGGGGCGCGCg-GCGgccgGGcGGGGgcgcgcggcggCCg -3'
miRNA:   3'- -CCCUGUGCGagCGCa---UC-CCCCaaa--------GG- -5'
5135 5' -55.9 NC_001798.1 + 36561 0.67 0.907211
Target:  5'- gGGGGCGCGCg-GCGgccgGGcGGGGgcgcgcggcggCCg -3'
miRNA:   3'- -CCCUGUGCGagCGCa---UC-CCCCaaa--------GG- -5'
5135 5' -55.9 NC_001798.1 + 150809 0.67 0.909014
Target:  5'- cGGGGCGCcgccgcugcugcuGCUcCGCGgggcgccAGGGGGcg-CCg -3'
miRNA:   3'- -CCCUGUG-------------CGA-GCGCa------UCCCCCaaaGG- -5'
5135 5' -55.9 NC_001798.1 + 16203 0.67 0.90961
Target:  5'- cGGGccgcccuccgcACGCGC-CGCcuGUGGGGGGgcgguggggCCg -3'
miRNA:   3'- -CCC-----------UGUGCGaGCG--CAUCCCCCaaa------GG- -5'
5135 5' -55.9 NC_001798.1 + 29500 0.67 0.90961
Target:  5'- cGGGGC-CGCccCGagagGGGGGGaUUCCc -3'
miRNA:   3'- -CCCUGuGCGa-GCgca-UCCCCCaAAGG- -5'
5135 5' -55.9 NC_001798.1 + 2065 0.66 0.941158
Target:  5'- aGGACagcccgccGCGCUCgGCGgaccacuccgGGGGGGgc-CCg -3'
miRNA:   3'- cCCUG--------UGCGAG-CGCa---------UCCCCCaaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.