Results 41 - 53 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 79403 | 0.66 | 0.855164 |
Target: 5'- gUCCGcgcccgCGCCCcugcucguUGAUCuucgCGCCCUCGa -3' miRNA: 3'- -AGGCua----GCGGG--------ACUAGua--GUGGGGGC- -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 31705 | 0.66 | 0.855164 |
Target: 5'- aCCGcgCGCCCcGGUCG-CGCaugaCCCa -3' miRNA: 3'- aGGCuaGCGGGaCUAGUaGUGg---GGGc -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 37350 | 0.66 | 0.860459 |
Target: 5'- cUCgGAUCGCCCccccaccuacgccaUGGUCAUgGCCgcaugUCCGa -3' miRNA: 3'- -AGgCUAGCGGG--------------ACUAGUAgUGG-----GGGC- -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 23061 | 0.66 | 0.870033 |
Target: 5'- gCCGuUCGCac-GAUCccGUCGCCCCCc -3' miRNA: 3'- aGGCuAGCGggaCUAG--UAGUGGGGGc -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 107649 | 0.66 | 0.870033 |
Target: 5'- gUCGAgaCGCCCUGuugCGccUCACCgCCGg -3' miRNA: 3'- aGGCUa-GCGGGACua-GU--AGUGGgGGC- -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 88507 | 0.66 | 0.870033 |
Target: 5'- aCCaGAUccaCGCCCuUGAUgagCAUCuuGCCCCCGc -3' miRNA: 3'- aGG-CUA---GCGGG-ACUA---GUAG--UGGGGGC- -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 154442 | 0.66 | 0.877162 |
Target: 5'- cCCGcgCGCCCccuucccCGUCccuCCCCCGg -3' miRNA: 3'- aGGCuaGCGGGacua---GUAGu--GGGGGC- -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 150695 | 0.66 | 0.877162 |
Target: 5'- cCCGcgCG-CCUGcgCG-CGCCCCCc -3' miRNA: 3'- aGGCuaGCgGGACuaGUaGUGGGGGc -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 101439 | 0.66 | 0.877162 |
Target: 5'- aCCGGUCGCUUUc--CA-CACCCCCu -3' miRNA: 3'- aGGCUAGCGGGAcuaGUaGUGGGGGc -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 35189 | 0.66 | 0.877162 |
Target: 5'- cUCGAUCGgcggcgggcCCCUGcguUCGUugcugccgCGCCCCCGg -3' miRNA: 3'- aGGCUAGC---------GGGACu--AGUA--------GUGGGGGC- -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 15112 | 0.66 | 0.877162 |
Target: 5'- gCCGGUgGCgCUG-UCGUCGUCCUCGg -3' miRNA: 3'- aGGCUAgCGgGACuAGUAGUGGGGGC- -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 104 | 0.66 | 0.877162 |
Target: 5'- cCCGcgCGCCCccuucccCGUCccuCCCCCGg -3' miRNA: 3'- aGGCuaGCGGGacua---GUAGu--GGGGGC- -5' |
|||||||
5136 | 3' | -57.6 | NC_001798.1 | + | 38436 | 0.66 | 0.877864 |
Target: 5'- gCCGGg-GCCCcacauuuauccggugGGUCAUCGCCCUCc -3' miRNA: 3'- aGGCUagCGGGa--------------CUAGUAGUGGGGGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home