miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 3' -57.6 NC_001798.1 + 82322 0.66 0.855164
Target:  5'- cCCGGUUGCCCg---CcgC-CCCCCa -3'
miRNA:   3'- aGGCUAGCGGGacuaGuaGuGGGGGc -5'
5136 3' -57.6 NC_001798.1 + 116582 0.67 0.814713
Target:  5'- -aUGGUgGUCCcGGagAUCGCCCCCGg -3'
miRNA:   3'- agGCUAgCGGGaCUagUAGUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 1482 0.67 0.823151
Target:  5'- gCCGggCGCCaUGG-CGUCGCCCgCGc -3'
miRNA:   3'- aGGCuaGCGGgACUaGUAGUGGGgGC- -5'
5136 3' -57.6 NC_001798.1 + 55142 0.67 0.83952
Target:  5'- gCCuGUCGCCCaUGccCGccCGCCCCCGg -3'
miRNA:   3'- aGGcUAGCGGG-ACuaGUa-GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 134997 0.67 0.83952
Target:  5'- cCCGcggugggCGCCagGGUCGUCcuGCCCCCGc -3'
miRNA:   3'- aGGCua-----GCGGgaCUAGUAG--UGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 134756 0.66 0.845081
Target:  5'- gCUGGUCGCCCucuuccggcagUGG-CAUaccacgguccacgcCGCCCCCGg -3'
miRNA:   3'- aGGCUAGCGGG-----------ACUaGUA--------------GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 77872 0.66 0.847436
Target:  5'- gCCGAggcggucacccUCGCCCUGGauacggccuUCGcguuuaaccccUaCACCCCCGa -3'
miRNA:   3'- aGGCU-----------AGCGGGACU---------AGU-----------A-GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 150880 0.66 0.847436
Target:  5'- uUCCGcggGUCGCCCccg-CAccgcCGCCCCCGc -3'
miRNA:   3'- -AGGC---UAGCGGGacuaGUa---GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 97311 0.66 0.85055
Target:  5'- gUgGA-CGCCCUGAUCAUCGgcggccaggcgacguCgCCCGa -3'
miRNA:   3'- aGgCUaGCGGGACUAGUAGU---------------GgGGGC- -5'
5136 3' -57.6 NC_001798.1 + 31705 0.66 0.855164
Target:  5'- aCCGcgCGCCCcGGUCG-CGCaugaCCCa -3'
miRNA:   3'- aGGCuaGCGGGaCUAGUaGUGg---GGGc -5'
5136 3' -57.6 NC_001798.1 + 79403 0.66 0.855164
Target:  5'- gUCCGcgcccgCGCCCcugcucguUGAUCuucgCGCCCUCGa -3'
miRNA:   3'- -AGGCua----GCGGG--------ACUAGua--GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 123433 0.66 0.855164
Target:  5'- aCCGGggCGCCCcccccGAcgCGcgCGCCCCCGa -3'
miRNA:   3'- aGGCUa-GCGGGa----CUa-GUa-GUGGGGGC- -5'
5136 3' -57.6 NC_001798.1 + 38436 0.66 0.877864
Target:  5'- gCCGGg-GCCCcacauuuauccggugGGUCAUCGCCCUCc -3'
miRNA:   3'- aGGCUagCGGGa--------------CUAGUAGUGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.