miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 5' -58.9 NC_001798.1 + 55981 0.68 0.719416
Target:  5'- cGCCGGGGAggCcGCgGGGGCGaggggCUGGu -3'
miRNA:   3'- -CGGCCCCUa-GaUGgCCCUGUa----GGCCu -5'
5136 5' -58.9 NC_001798.1 + 137401 0.68 0.719416
Target:  5'- cCCGGGcg---ACCGGGAUcggGUCCGGGu -3'
miRNA:   3'- cGGCCCcuagaUGGCCCUG---UAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 4129 0.68 0.709791
Target:  5'- gGCCGGGGcgCcgcccCCGGGGCccUCgCGGGc -3'
miRNA:   3'- -CGGCCCCuaGau---GGCCCUGu-AG-GCCU- -5'
5136 5' -58.9 NC_001798.1 + 20877 0.68 0.709791
Target:  5'- aGCUGGGGAgga--CGGGGCGUCUGc- -3'
miRNA:   3'- -CGGCCCCUagaugGCCCUGUAGGCcu -5'
5136 5' -58.9 NC_001798.1 + 47057 0.68 0.709791
Target:  5'- aUCGGGGAcgcgcaaUGCCGGGGCGacagcgCCGGu -3'
miRNA:   3'- cGGCCCCUag-----AUGGCCCUGUa-----GGCCu -5'
5136 5' -58.9 NC_001798.1 + 102214 0.68 0.709791
Target:  5'- cGCCGGGaGUCgACCGGGcGCggCuCGGGg -3'
miRNA:   3'- -CGGCCCcUAGaUGGCCC-UGuaG-GCCU- -5'
5136 5' -58.9 NC_001798.1 + 110533 0.68 0.709791
Target:  5'- cGCUGGGGGUCguuaugauUACCGcggcccuggcGGGCAUCCuuaGGGu -3'
miRNA:   3'- -CGGCCCCUAG--------AUGGC----------CCUGUAGG---CCU- -5'
5136 5' -58.9 NC_001798.1 + 135789 0.68 0.709791
Target:  5'- cGCCGGaGGAggccgugugcgCggcCCGGGGCGUCaUGGAg -3'
miRNA:   3'- -CGGCC-CCUa----------Gau-GGCCCUGUAG-GCCU- -5'
5136 5' -58.9 NC_001798.1 + 88985 0.68 0.700104
Target:  5'- cUCGGGGGUgCU-CUGGGGgAUCCGcGAg -3'
miRNA:   3'- cGGCCCCUA-GAuGGCCCUgUAGGC-CU- -5'
5136 5' -58.9 NC_001798.1 + 68463 0.69 0.680577
Target:  5'- -gCGGGGAUUgcgagcucgcgGCCGGGACGgcgagCGGAa -3'
miRNA:   3'- cgGCCCCUAGa----------UGGCCCUGUag---GCCU- -5'
5136 5' -58.9 NC_001798.1 + 4886 0.69 0.680577
Target:  5'- cGUCGGcuGGAUCcggagauCCGGGGCcgCCGGu -3'
miRNA:   3'- -CGGCC--CCUAGau-----GGCCCUGuaGGCCu -5'
5136 5' -58.9 NC_001798.1 + 77540 0.69 0.670754
Target:  5'- uUCGGGGGcCUGCUgcacgccgaaGGGACggCCGGGg -3'
miRNA:   3'- cGGCCCCUaGAUGG----------CCCUGuaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 42814 0.69 0.670754
Target:  5'- cGUCGGGG-UCUACgCGGG-CcgCgGGAa -3'
miRNA:   3'- -CGGCCCCuAGAUG-GCCCuGuaGgCCU- -5'
5136 5' -58.9 NC_001798.1 + 59521 0.69 0.670754
Target:  5'- aGCCguauGGGGGUCUuUgGGGACc-CCGGAa -3'
miRNA:   3'- -CGG----CCCCUAGAuGgCCCUGuaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 135222 0.69 0.660902
Target:  5'- cUCGGGGAg--GCCGGGcug-CCGGAa -3'
miRNA:   3'- cGGCCCCUagaUGGCCCuguaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 79937 0.69 0.660902
Target:  5'- cGCUGGGcccagCUggGCUGGG-CGUCCGGAg -3'
miRNA:   3'- -CGGCCCcua--GA--UGGCCCuGUAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 65876 0.69 0.660902
Target:  5'- gGCCuGGGGGUUUACCaGGuaGCAgCUGGAc -3'
miRNA:   3'- -CGG-CCCCUAGAUGGcCC--UGUaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 2340 0.69 0.660902
Target:  5'- gGCgCGGGGAag-AgCGGGugGUCCGuGAg -3'
miRNA:   3'- -CG-GCCCCUagaUgGCCCugUAGGC-CU- -5'
5136 5' -58.9 NC_001798.1 + 36402 0.69 0.660902
Target:  5'- cGCCGGGGcccccCUGCCGGGcggggcggugggGCGgggUCGGGg -3'
miRNA:   3'- -CGGCCCCua---GAUGGCCC------------UGUa--GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 128890 0.69 0.631246
Target:  5'- cGCCGGaGGcgUU-CCGGGcguuCAUCCGGu -3'
miRNA:   3'- -CGGCC-CCuaGAuGGCCCu---GUAGGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.