miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 5' -58.9 NC_001798.1 + 26481 0.66 0.801901
Target:  5'- cGCUGGGcGUCgGCCGcGGGCcgCgCGGGg -3'
miRNA:   3'- -CGGCCCcUAGaUGGC-CCUGuaG-GCCU- -5'
5136 5' -58.9 NC_001798.1 + 61462 0.66 0.801901
Target:  5'- cGCCGGGGc-CU-CCGGGcc--CCGGAg -3'
miRNA:   3'- -CGGCCCCuaGAuGGCCCuguaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 88752 0.66 0.801901
Target:  5'- aCCGGGGGcgcgcaUGCCGGccGCcUCCGGAa -3'
miRNA:   3'- cGGCCCCUag----AUGGCCc-UGuAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 25580 0.67 0.793204
Target:  5'- uGCCGGGcGAggaccugGCCGcGGGCcgcgCCGGGg -3'
miRNA:   3'- -CGGCCC-CUaga----UGGC-CCUGua--GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 15194 0.67 0.793204
Target:  5'- gGUgGGGGggCUggcgaGCCGGGgggaGCGUCCGcGGg -3'
miRNA:   3'- -CGgCCCCuaGA-----UGGCCC----UGUAGGC-CU- -5'
5136 5' -58.9 NC_001798.1 + 83646 0.67 0.78437
Target:  5'- aGCggaGGGGAUgUGCggcuCGcGGGCGUCUGGGa -3'
miRNA:   3'- -CGg--CCCCUAgAUG----GC-CCUGUAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 27919 0.67 0.775409
Target:  5'- cGCCGGGGuccccgCcGCCGGGGuccCGgcgCCGGc -3'
miRNA:   3'- -CGGCCCCua----GaUGGCCCU---GUa--GGCCu -5'
5136 5' -58.9 NC_001798.1 + 102644 0.67 0.775409
Target:  5'- cGCCGGGcGG-CggagggGCCGGGGCGcCCGa- -3'
miRNA:   3'- -CGGCCC-CUaGa-----UGGCCCUGUaGGCcu -5'
5136 5' -58.9 NC_001798.1 + 150912 0.67 0.766328
Target:  5'- cGCCGGGGcgCU-CUucggGGGGCGggCGGGa -3'
miRNA:   3'- -CGGCCCCuaGAuGG----CCCUGUagGCCU- -5'
5136 5' -58.9 NC_001798.1 + 56066 0.67 0.766328
Target:  5'- gGgCGGGGcgCUcucuuCCGGaGGCGUuuGGAg -3'
miRNA:   3'- -CgGCCCCuaGAu----GGCC-CUGUAggCCU- -5'
5136 5' -58.9 NC_001798.1 + 3011 0.67 0.766328
Target:  5'- cGCgGGGGcgCggcggGCCGGG-C-UCCGGc -3'
miRNA:   3'- -CGgCCCCuaGa----UGGCCCuGuAGGCCu -5'
5136 5' -58.9 NC_001798.1 + 133320 0.67 0.765414
Target:  5'- gGCCGGGGGgucggggcgaaccUUUAgccCCGaGGACGUgCUGGAg -3'
miRNA:   3'- -CGGCCCCU-------------AGAU---GGC-CCUGUA-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 54706 0.67 0.760825
Target:  5'- cGCCGGGG-UCUACgacgcggugcggaccUGGGGg--CCGGAc -3'
miRNA:   3'- -CGGCCCCuAGAUG---------------GCCCUguaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 154113 0.67 0.757135
Target:  5'- cGCCGGGGAcccCggcgGCgGGGACc-CCGGc -3'
miRNA:   3'- -CGGCCCCUa--Ga---UGgCCCUGuaGGCCu -5'
5136 5' -58.9 NC_001798.1 + 88035 0.67 0.757135
Target:  5'- gGCCGGGGAgg-GCa-GGGCcgCUGGGg -3'
miRNA:   3'- -CGGCCCCUagaUGgcCCUGuaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 150418 0.67 0.74784
Target:  5'- -aCGGGGGcggCggcgGCgCGGGGCGgacUCCGGAc -3'
miRNA:   3'- cgGCCCCUa--Ga---UG-GCCCUGU---AGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 39546 0.67 0.74784
Target:  5'- cGCCGuGGGuggcGCCGGGGcCGUCCGu- -3'
miRNA:   3'- -CGGC-CCCuagaUGGCCCU-GUAGGCcu -5'
5136 5' -58.9 NC_001798.1 + 45915 0.68 0.738449
Target:  5'- aUCGGcGGGUCU-CgGGGgguggcggucGCGUCCGGAa -3'
miRNA:   3'- cGGCC-CCUAGAuGgCCC----------UGUAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 153522 0.68 0.738449
Target:  5'- -aCGGGGGUCgga-GGGGCGUCaGGGg -3'
miRNA:   3'- cgGCCCCUAGauggCCCUGUAGgCCU- -5'
5136 5' -58.9 NC_001798.1 + 134851 0.68 0.727067
Target:  5'- uCCGGGGAgggcccgUCcaauacuuugccgUGCUGGGAUuUCCGGGc -3'
miRNA:   3'- cGGCCCCU-------AG-------------AUGGCCCUGuAGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.