miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 5' -58.9 NC_001798.1 + 55008 0.72 0.495693
Target:  5'- uGCCGGcGGGgccgccCUGCCGGGAgAcgccCCGGAc -3'
miRNA:   3'- -CGGCC-CCUa-----GAUGGCCCUgUa---GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 34832 0.72 0.495693
Target:  5'- cGCCGGGGGcCcggGCC-GGACcgCCGGGc -3'
miRNA:   3'- -CGGCCCCUaGa--UGGcCCUGuaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 147154 0.72 0.505018
Target:  5'- gGCCGGGGGUC--CCGGGuagccgcccgGCG-CCGGGc -3'
miRNA:   3'- -CGGCCCCUAGauGGCCC----------UGUaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 74210 0.71 0.514418
Target:  5'- gGCaUGGGGcUCUACCGGGACGgcgacaCGGc -3'
miRNA:   3'- -CG-GCCCCuAGAUGGCCCUGUag----GCCu -5'
5136 5' -58.9 NC_001798.1 + 37987 0.71 0.543022
Target:  5'- cGCgGGGGAUgcACCGGaGACGUCCu-- -3'
miRNA:   3'- -CGgCCCCUAgaUGGCC-CUGUAGGccu -5'
5136 5' -58.9 NC_001798.1 + 47733 0.71 0.552675
Target:  5'- gGCUGGGuaugcccUCUACCGGGACucgucUUCGGAc -3'
miRNA:   3'- -CGGCCCcu-----AGAUGGCCCUGu----AGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 85994 0.71 0.56238
Target:  5'- cGCCGGGGcgCUggcGCagggGGGugAgCCGGAg -3'
miRNA:   3'- -CGGCCCCuaGA---UGg---CCCugUaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 16633 0.7 0.57213
Target:  5'- cGCCGGGGcagGUCuUGCCGcccGGCGUCCGcGGa -3'
miRNA:   3'- -CGGCCCC---UAG-AUGGCc--CUGUAGGC-CU- -5'
5136 5' -58.9 NC_001798.1 + 46055 0.7 0.581919
Target:  5'- cCCGGcuuguaGGGUC-ACCGGGAC-UCCGGu -3'
miRNA:   3'- cGGCC------CCUAGaUGGCCCUGuAGGCCu -5'
5136 5' -58.9 NC_001798.1 + 6545 0.7 0.591743
Target:  5'- gGCCGGGGGg--ACgggGGGACGggCCGGGg -3'
miRNA:   3'- -CGGCCCCUagaUGg--CCCUGUa-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6587 0.7 0.591743
Target:  5'- gGCCGGGGGg--ACgggGGGACGggCCGGGg -3'
miRNA:   3'- -CGGCCCCUagaUGg--CCCUGUa-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 152942 0.7 0.601593
Target:  5'- uGCgCGGGGAUggcgGCCGGGACcgCCu-- -3'
miRNA:   3'- -CG-GCCCCUAga--UGGCCCUGuaGGccu -5'
5136 5' -58.9 NC_001798.1 + 148086 0.7 0.601593
Target:  5'- gGCCGGGG----GCCGGGGCcgCUagGGAa -3'
miRNA:   3'- -CGGCCCCuagaUGGCCCUGuaGG--CCU- -5'
5136 5' -58.9 NC_001798.1 + 129356 0.7 0.601593
Target:  5'- cGCCGGGc--CUGgCGGGGCccCCGGAc -3'
miRNA:   3'- -CGGCCCcuaGAUgGCCCUGuaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 54400 0.7 0.601593
Target:  5'- gGUCGGcGGGagCUGCCGGGACAagauacaaCGGAc -3'
miRNA:   3'- -CGGCC-CCUa-GAUGGCCCUGUag------GCCU- -5'
5136 5' -58.9 NC_001798.1 + 132146 0.7 0.611465
Target:  5'- cGCCGGGGGcCggcgGgCGGGGCGccccccCCGGAc -3'
miRNA:   3'- -CGGCCCCUaGa---UgGCCCUGUa-----GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 81181 0.7 0.621351
Target:  5'- aCgGGGGAgCUGuucCCGGGACAcCCGGu -3'
miRNA:   3'- cGgCCCCUaGAU---GGCCCUGUaGGCCu -5'
5136 5' -58.9 NC_001798.1 + 151611 0.69 0.631246
Target:  5'- gGCCGGGGGcCggGCCGGGggcguggccGCGUCCa-- -3'
miRNA:   3'- -CGGCCCCUaGa-UGGCCC---------UGUAGGccu -5'
5136 5' -58.9 NC_001798.1 + 102780 0.69 0.631246
Target:  5'- gGCgGGGGAUgUGucauggcacCCGGGGCG-CCGGu -3'
miRNA:   3'- -CGgCCCCUAgAU---------GGCCCUGUaGGCCu -5'
5136 5' -58.9 NC_001798.1 + 128890 0.69 0.631246
Target:  5'- cGCCGGaGGcgUU-CCGGGcguuCAUCCGGu -3'
miRNA:   3'- -CGGCC-CCuaGAuGGCCCu---GUAGGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.