miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 5' -58.9 NC_001798.1 + 129451 1.06 0.003067
Target:  5'- aGCCGGGGAUCUACCGGGACAUCCGGc -3'
miRNA:   3'- -CGGCCCCUAGAUGGCCCUGUAGGCCu -5'
5136 5' -58.9 NC_001798.1 + 152220 0.8 0.159395
Target:  5'- uGCCGGGGGUCUGCCGcGGCGgccgcucggggCCGGGg -3'
miRNA:   3'- -CGGCCCCUAGAUGGCcCUGUa----------GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 66860 0.78 0.218328
Target:  5'- uCCGGGGAgucGCCGGGGCG-CCGGGg -3'
miRNA:   3'- cGGCCCCUagaUGGCCCUGUaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 139370 0.77 0.24556
Target:  5'- cGgCGGGGAgggCU-CgCGGGACGUCCGGGc -3'
miRNA:   3'- -CgGCCCCUa--GAuG-GCCCUGUAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 119012 0.76 0.294914
Target:  5'- cGCgCGGcuGGUCgcCCGGGGCAUCCGGGa -3'
miRNA:   3'- -CG-GCCc-CUAGauGGCCCUGUAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6359 0.76 0.294914
Target:  5'- gGCCGGGGGgacggGCCGGGGgG-CCGGGg -3'
miRNA:   3'- -CGGCCCCUaga--UGGCCCUgUaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 153005 0.76 0.315319
Target:  5'- cGCgGGGcGGUC-GCCGGGGCggaGUCCGGGc -3'
miRNA:   3'- -CGgCCC-CUAGaUGGCCCUG---UAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6388 0.74 0.374843
Target:  5'- gGCCGGGGG---GCCGGGGgG-CCGGGg -3'
miRNA:   3'- -CGGCCCCUagaUGGCCCUgUaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6307 0.74 0.399043
Target:  5'- gGCCGGGGGgacggGCCgggGGGACGggCCGGGg -3'
miRNA:   3'- -CGGCCCCUaga--UGG---CCCUGUa-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6268 0.74 0.399043
Target:  5'- gGCCGGGGGgacggGCCgggGGGACGggCCGGGg -3'
miRNA:   3'- -CGGCCCCUaga--UGG---CCCUGUa-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 76975 0.74 0.399043
Target:  5'- -gUGGGGG-CUGCUGGGGCAguaCCGGGa -3'
miRNA:   3'- cgGCCCCUaGAUGGCCCUGUa--GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 4416 0.73 0.413193
Target:  5'- cGCCGGGGGUCg--CGGcGACAggcuggccauggggUCCGGGu -3'
miRNA:   3'- -CGGCCCCUAGaugGCC-CUGU--------------AGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 34881 0.73 0.43282
Target:  5'- cGCCGGGcGG-CUAcCCGGGACccccggCCGGGa -3'
miRNA:   3'- -CGGCCC-CUaGAU-GGCCCUGua----GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 41382 0.73 0.441522
Target:  5'- cGCCGGGGAUg-GCCGGGAgGgacaCGGc -3'
miRNA:   3'- -CGGCCCCUAgaUGGCCCUgUag--GCCu -5'
5136 5' -58.9 NC_001798.1 + 154072 0.73 0.44503
Target:  5'- cGCCGGGGcgCggcacggcuggagcGCCGGGGCGcggCCGGc -3'
miRNA:   3'- -CGGCCCCuaGa-------------UGGCCCUGUa--GGCCu -5'
5136 5' -58.9 NC_001798.1 + 104586 0.73 0.450322
Target:  5'- cUCGGGGAacgUCgcCCGGGGCcgCCGGu -3'
miRNA:   3'- cGGCCCCU---AGauGGCCCUGuaGGCCu -5'
5136 5' -58.9 NC_001798.1 + 106190 0.72 0.468205
Target:  5'- uGCCGGaGAUCuuUugCGGGACGagCCGGGu -3'
miRNA:   3'- -CGGCCcCUAG--AugGCCCUGUa-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 4083 0.72 0.477283
Target:  5'- cGCCgcGGGGGUCcggGCCGGGGCGggcUCGGc -3'
miRNA:   3'- -CGG--CCCCUAGa--UGGCCCUGUa--GGCCu -5'
5136 5' -58.9 NC_001798.1 + 9169 0.72 0.486447
Target:  5'- cGCCGGGGGgcagggucUCUGgCGGGuccccgcguGCGUCCGcGAu -3'
miRNA:   3'- -CGGCCCCU--------AGAUgGCCC---------UGUAGGC-CU- -5'
5136 5' -58.9 NC_001798.1 + 83784 0.72 0.486447
Target:  5'- cGCCGGGGggCccggACgCGGGGC--CCGGAa -3'
miRNA:   3'- -CGGCCCCuaGa---UG-GCCCUGuaGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.