miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 5' -58.9 NC_001798.1 + 2340 0.69 0.660902
Target:  5'- gGCgCGGGGAag-AgCGGGugGUCCGuGAg -3'
miRNA:   3'- -CG-GCCCCUagaUgGCCCugUAGGC-CU- -5'
5136 5' -58.9 NC_001798.1 + 3011 0.67 0.766328
Target:  5'- cGCgGGGGcgCggcggGCCGGG-C-UCCGGc -3'
miRNA:   3'- -CGgCCCCuaGa----UGGCCCuGuAGGCCu -5'
5136 5' -58.9 NC_001798.1 + 4083 0.72 0.477283
Target:  5'- cGCCgcGGGGGUCcggGCCGGGGCGggcUCGGc -3'
miRNA:   3'- -CGG--CCCCUAGa--UGGCCCUGUa--GGCCu -5'
5136 5' -58.9 NC_001798.1 + 4129 0.68 0.709791
Target:  5'- gGCCGGGGcgCcgcccCCGGGGCccUCgCGGGc -3'
miRNA:   3'- -CGGCCCCuaGau---GGCCCUGu-AG-GCCU- -5'
5136 5' -58.9 NC_001798.1 + 4416 0.73 0.413193
Target:  5'- cGCCGGGGGUCg--CGGcGACAggcuggccauggggUCCGGGu -3'
miRNA:   3'- -CGGCCCCUAGaugGCC-CUGU--------------AGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 4886 0.69 0.680577
Target:  5'- cGUCGGcuGGAUCcggagauCCGGGGCcgCCGGu -3'
miRNA:   3'- -CGGCC--CCUAGau-----GGCCCUGuaGGCCu -5'
5136 5' -58.9 NC_001798.1 + 6225 0.66 0.801901
Target:  5'- cCCGGGGggCcgGCCgggGGGACGggCGGGg -3'
miRNA:   3'- cGGCCCCuaGa-UGG---CCCUGUagGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6268 0.74 0.399043
Target:  5'- gGCCGGGGGgacggGCCgggGGGACGggCCGGGg -3'
miRNA:   3'- -CGGCCCCUaga--UGG---CCCUGUa-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6307 0.74 0.399043
Target:  5'- gGCCGGGGGgacggGCCgggGGGACGggCCGGGg -3'
miRNA:   3'- -CGGCCCCUaga--UGG---CCCUGUa-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6359 0.76 0.294914
Target:  5'- gGCCGGGGGgacggGCCGGGGgG-CCGGGg -3'
miRNA:   3'- -CGGCCCCUaga--UGGCCCUgUaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6388 0.74 0.374843
Target:  5'- gGCCGGGGG---GCCGGGGgG-CCGGGg -3'
miRNA:   3'- -CGGCCCCUagaUGGCCCUgUaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6545 0.7 0.591743
Target:  5'- gGCCGGGGGg--ACgggGGGACGggCCGGGg -3'
miRNA:   3'- -CGGCCCCUagaUGg--CCCUGUa-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 6587 0.7 0.591743
Target:  5'- gGCCGGGGGg--ACgggGGGACGggCCGGGg -3'
miRNA:   3'- -CGGCCCCUagaUGg--CCCUGUa-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 8859 0.66 0.83518
Target:  5'- gGCCGGGaGGUC-AUCGcGGACG--CGGAa -3'
miRNA:   3'- -CGGCCC-CUAGaUGGC-CCUGUagGCCU- -5'
5136 5' -58.9 NC_001798.1 + 9169 0.72 0.486447
Target:  5'- cGCCGGGGGgcagggucUCUGgCGGGuccccgcguGCGUCCGcGAu -3'
miRNA:   3'- -CGGCCCCU--------AGAUgGCCC---------UGUAGGC-CU- -5'
5136 5' -58.9 NC_001798.1 + 15194 0.67 0.793204
Target:  5'- gGUgGGGGggCUggcgaGCCGGGgggaGCGUCCGcGGg -3'
miRNA:   3'- -CGgCCCCuaGA-----UGGCCC----UGUAGGC-CU- -5'
5136 5' -58.9 NC_001798.1 + 16067 0.66 0.83518
Target:  5'- cGCUGGGGGcggcgggcgUCUGUgGGGGCAgacagcgcucCCGGAa -3'
miRNA:   3'- -CGGCCCCU---------AGAUGgCCCUGUa---------GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 16633 0.7 0.57213
Target:  5'- cGCCGGGGcagGUCuUGCCGcccGGCGUCCGcGGa -3'
miRNA:   3'- -CGGCCCC---UAG-AUGGCc--CUGUAGGC-CU- -5'
5136 5' -58.9 NC_001798.1 + 18218 0.66 0.830354
Target:  5'- cGCCGGGGGaCggugGgCGGGAaggguggaugguuUCCGGGg -3'
miRNA:   3'- -CGGCCCCUaGa---UgGCCCUgu-----------AGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 18286 0.66 0.827102
Target:  5'- -gCGGGGGUauaaaaggugCUcGCCGGGAaggCCGGGg -3'
miRNA:   3'- cgGCCCCUA----------GA-UGGCCCUguaGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.