miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 5' -58.9 NC_001798.1 + 154113 0.67 0.757135
Target:  5'- cGCCGGGGAcccCggcgGCgGGGACc-CCGGc -3'
miRNA:   3'- -CGGCCCCUa--Ga---UGgCCCUGuaGGCCu -5'
5136 5' -58.9 NC_001798.1 + 154072 0.73 0.44503
Target:  5'- cGCCGGGGcgCggcacggcuggagcGCCGGGGCGcggCCGGc -3'
miRNA:   3'- -CGGCCCCuaGa-------------UGGCCCUGUa--GGCCu -5'
5136 5' -58.9 NC_001798.1 + 153522 0.68 0.738449
Target:  5'- -aCGGGGGUCgga-GGGGCGUCaGGGg -3'
miRNA:   3'- cgGCCCCUAGauggCCCUGUAGgCCU- -5'
5136 5' -58.9 NC_001798.1 + 153005 0.76 0.315319
Target:  5'- cGCgGGGcGGUC-GCCGGGGCggaGUCCGGGc -3'
miRNA:   3'- -CGgCCC-CUAGaUGGCCCUG---UAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 152942 0.7 0.601593
Target:  5'- uGCgCGGGGAUggcgGCCGGGACcgCCu-- -3'
miRNA:   3'- -CG-GCCCCUAga--UGGCCCUGuaGGccu -5'
5136 5' -58.9 NC_001798.1 + 152220 0.8 0.159395
Target:  5'- uGCCGGGGGUCUGCCGcGGCGgccgcucggggCCGGGg -3'
miRNA:   3'- -CGGCCCCUAGAUGGCcCUGUa----------GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 151611 0.69 0.631246
Target:  5'- gGCCGGGGGcCggGCCGGGggcguggccGCGUCCa-- -3'
miRNA:   3'- -CGGCCCCUaGa-UGGCCC---------UGUAGGccu -5'
5136 5' -58.9 NC_001798.1 + 150912 0.67 0.766328
Target:  5'- cGCCGGGGcgCU-CUucggGGGGCGggCGGGa -3'
miRNA:   3'- -CGGCCCCuaGAuGG----CCCUGUagGCCU- -5'
5136 5' -58.9 NC_001798.1 + 150418 0.67 0.74784
Target:  5'- -aCGGGGGcggCggcgGCgCGGGGCGgacUCCGGAc -3'
miRNA:   3'- cgGCCCCUa--Ga---UG-GCCCUGU---AGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 148086 0.7 0.601593
Target:  5'- gGCCGGGG----GCCGGGGCcgCUagGGAa -3'
miRNA:   3'- -CGGCCCCuagaUGGCCCUGuaGG--CCU- -5'
5136 5' -58.9 NC_001798.1 + 147154 0.72 0.505018
Target:  5'- gGCCGGGGGUC--CCGGGuagccgcccgGCG-CCGGGc -3'
miRNA:   3'- -CGGCCCCUAGauGGCCC----------UGUaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 146476 0.66 0.818858
Target:  5'- cGCCGcGGG--CU-CCGGGGCcgggCCGGGc -3'
miRNA:   3'- -CGGC-CCCuaGAuGGCCCUGua--GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 139370 0.77 0.24556
Target:  5'- cGgCGGGGAgggCU-CgCGGGACGUCCGGGc -3'
miRNA:   3'- -CgGCCCCUa--GAuG-GCCCUGUAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 137479 0.69 0.631246
Target:  5'- gGuuGGGGAgggggGCCGGGGCAgagCCGc- -3'
miRNA:   3'- -CggCCCCUaga--UGGCCCUGUa--GGCcu -5'
5136 5' -58.9 NC_001798.1 + 137401 0.68 0.719416
Target:  5'- cCCGGGcg---ACCGGGAUcggGUCCGGGu -3'
miRNA:   3'- cGGCCCcuagaUGGCCCUG---UAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 135789 0.68 0.709791
Target:  5'- cGCCGGaGGAggccgugugcgCggcCCGGGGCGUCaUGGAg -3'
miRNA:   3'- -CGGCC-CCUa----------Gau-GGCCCUGUAG-GCCU- -5'
5136 5' -58.9 NC_001798.1 + 135222 0.69 0.660902
Target:  5'- cUCGGGGAg--GCCGGGcug-CCGGAa -3'
miRNA:   3'- cGGCCCCUagaUGGCCCuguaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 134851 0.68 0.727067
Target:  5'- uCCGGGGAgggcccgUCcaauacuuugccgUGCUGGGAUuUCCGGGc -3'
miRNA:   3'- cGGCCCCU-------AG-------------AUGGCCCUGuAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 133320 0.67 0.765414
Target:  5'- gGCCGGGGGgucggggcgaaccUUUAgccCCGaGGACGUgCUGGAg -3'
miRNA:   3'- -CGGCCCCU-------------AGAU---GGC-CCUGUA-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 132518 0.66 0.843086
Target:  5'- cGCaagGGGGAgcugcugaUCUACauGGACGggUCCGGGg -3'
miRNA:   3'- -CGg--CCCCU--------AGAUGgcCCUGU--AGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.