miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5136 5' -58.9 NC_001798.1 + 20877 0.68 0.709791
Target:  5'- aGCUGGGGAgga--CGGGGCGUCUGc- -3'
miRNA:   3'- -CGGCCCCUagaugGCCCUGUAGGCcu -5'
5136 5' -58.9 NC_001798.1 + 24664 0.66 0.810455
Target:  5'- cCUGGcGGccgUGCCGGGGCuggCCGGAg -3'
miRNA:   3'- cGGCC-CCuagAUGGCCCUGua-GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 25580 0.67 0.793204
Target:  5'- uGCCGGGcGAggaccugGCCGcGGGCcgcgCCGGGg -3'
miRNA:   3'- -CGGCCC-CUaga----UGGC-CCUGua--GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 26481 0.66 0.801901
Target:  5'- cGCUGGGcGUCgGCCGcGGGCcgCgCGGGg -3'
miRNA:   3'- -CGGCCCcUAGaUGGC-CCUGuaG-GCCU- -5'
5136 5' -58.9 NC_001798.1 + 27919 0.67 0.775409
Target:  5'- cGCCGGGGuccccgCcGCCGGGGuccCGgcgCCGGc -3'
miRNA:   3'- -CGGCCCCua----GaUGGCCCU---GUa--GGCCu -5'
5136 5' -58.9 NC_001798.1 + 34832 0.72 0.495693
Target:  5'- cGCCGGGGGcCcggGCC-GGACcgCCGGGc -3'
miRNA:   3'- -CGGCCCCUaGa--UGGcCCUGuaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 34881 0.73 0.43282
Target:  5'- cGCCGGGcGG-CUAcCCGGGACccccggCCGGGa -3'
miRNA:   3'- -CGGCCC-CUaGAU-GGCCCUGua----GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 36312 0.66 0.818858
Target:  5'- cGgCGGGGcgCggGCCGGGg---CCGGGg -3'
miRNA:   3'- -CgGCCCCuaGa-UGGCCCuguaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 36402 0.69 0.660902
Target:  5'- cGCCGGGGcccccCUGCCGGGcggggcggugggGCGgggUCGGGg -3'
miRNA:   3'- -CGGCCCCua---GAUGGCCC------------UGUa--GGCCU- -5'
5136 5' -58.9 NC_001798.1 + 37987 0.71 0.543022
Target:  5'- cGCgGGGGAUgcACCGGaGACGUCCu-- -3'
miRNA:   3'- -CGgCCCCUAgaUGGCC-CUGUAGGccu -5'
5136 5' -58.9 NC_001798.1 + 39546 0.67 0.74784
Target:  5'- cGCCGuGGGuggcGCCGGGGcCGUCCGu- -3'
miRNA:   3'- -CGGC-CCCuagaUGGCCCU-GUAGGCcu -5'
5136 5' -58.9 NC_001798.1 + 41382 0.73 0.441522
Target:  5'- cGCCGGGGAUg-GCCGGGAgGgacaCGGc -3'
miRNA:   3'- -CGGCCCCUAgaUGGCCCUgUag--GCCu -5'
5136 5' -58.9 NC_001798.1 + 42814 0.69 0.670754
Target:  5'- cGUCGGGG-UCUACgCGGG-CcgCgGGAa -3'
miRNA:   3'- -CGGCCCCuAGAUG-GCCCuGuaGgCCU- -5'
5136 5' -58.9 NC_001798.1 + 43022 0.66 0.843086
Target:  5'- cCCGGGGGga-GCgCGGGGCc-CCGGGc -3'
miRNA:   3'- cGGCCCCUagaUG-GCCCUGuaGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 45915 0.68 0.738449
Target:  5'- aUCGGcGGGUCU-CgGGGgguggcggucGCGUCCGGAa -3'
miRNA:   3'- cGGCC-CCUAGAuGgCCC----------UGUAGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 46055 0.7 0.581919
Target:  5'- cCCGGcuuguaGGGUC-ACCGGGAC-UCCGGu -3'
miRNA:   3'- cGGCC------CCUAGaUGGCCCUGuAGGCCu -5'
5136 5' -58.9 NC_001798.1 + 46532 0.66 0.843086
Target:  5'- gGUCGGGGGggugGCCcGGAUGUCCaGAa -3'
miRNA:   3'- -CGGCCCCUaga-UGGcCCUGUAGGcCU- -5'
5136 5' -58.9 NC_001798.1 + 47057 0.68 0.709791
Target:  5'- aUCGGGGAcgcgcaaUGCCGGGGCGacagcgCCGGu -3'
miRNA:   3'- cGGCCCCUag-----AUGGCCCUGUa-----GGCCu -5'
5136 5' -58.9 NC_001798.1 + 47733 0.71 0.552675
Target:  5'- gGCUGGGuaugcccUCUACCGGGACucgucUUCGGAc -3'
miRNA:   3'- -CGGCCCcu-----AGAUGGCCCUGu----AGGCCU- -5'
5136 5' -58.9 NC_001798.1 + 51538 0.66 0.826285
Target:  5'- cGCCGcguGGGAcgaguccgugcgcUCggcccugGCCcuGGGACAUCCGGc -3'
miRNA:   3'- -CGGC---CCCU-------------AGa------UGG--CCCUGUAGGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.