miRNA display CGI


Results 61 - 80 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 135492 0.67 0.605726
Target:  5'- cCCGGGGAcGC-GGa-CGCCGCGcacGGCg -3'
miRNA:   3'- aGGCCCCU-CGaCCaaGCGGCGC---UCGg -5'
5137 5' -61.8 NC_001798.1 + 112027 0.67 0.59988
Target:  5'- cCCGGucaccagcacccccGGGCUGGUUCGCaGCGAGgUg -3'
miRNA:   3'- aGGCCc-------------CUCGACCAAGCGgCGCUCgG- -5'
5137 5' -61.8 NC_001798.1 + 81181 0.67 0.596959
Target:  5'- aCgGGGGAGCUguucccgggacacccGGUuuaccagcgcccccUCGCCGaCGAGgCa -3'
miRNA:   3'- aGgCCCCUCGA---------------CCA--------------AGCGGC-GCUCgG- -5'
5137 5' -61.8 NC_001798.1 + 26293 0.67 0.595986
Target:  5'- gCUGGGGc-CUGGgcgCGCCGCugcGGCCc -3'
miRNA:   3'- aGGCCCCucGACCaa-GCGGCGc--UCGG- -5'
5137 5' -61.8 NC_001798.1 + 97735 0.67 0.595986
Target:  5'- -gCGGGGAGCUcgagaagaUGCUGCGGGUCa -3'
miRNA:   3'- agGCCCCUCGAccaa----GCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 78561 0.67 0.595986
Target:  5'- cCUGcGGGAggcGCUGGc-CGCgCGCGAGCg -3'
miRNA:   3'- aGGC-CCCU---CGACCaaGCG-GCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 90392 0.67 0.595986
Target:  5'- gUCGGGGGGCgcGGUUgGgccggcgcguucCCGCG-GCCg -3'
miRNA:   3'- aGGCCCCUCGa-CCAAgC------------GGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 23877 0.67 0.58627
Target:  5'- cUCUGGGGGGCgcccgaGGcggaggaGgCGCGGGCCc -3'
miRNA:   3'- -AGGCCCCUCGa-----CCaag----CgGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 15347 0.67 0.58627
Target:  5'- -gCGGGGGGCgaggcGGUgaggggggaaUCgGCCGUGGGCg -3'
miRNA:   3'- agGCCCCUCGa----CCA----------AG-CGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 28795 0.67 0.58627
Target:  5'- -gCGGcGGcGCgcgGGUccuccgcCGCCGCGGGCCc -3'
miRNA:   3'- agGCC-CCuCGa--CCAa------GCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 25581 0.68 0.576584
Target:  5'- gCCGGGcGAGgacc-UgGCCGCGGGCCg -3'
miRNA:   3'- aGGCCC-CUCgaccaAgCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 32237 0.68 0.566935
Target:  5'- gCgGGcGGGGCUGGUgggagCGUCGCGuccGCg -3'
miRNA:   3'- aGgCC-CCUCGACCAa----GCGGCGCu--CGg -5'
5137 5' -61.8 NC_001798.1 + 50095 0.68 0.566935
Target:  5'- -gCGGaGGccgGGCUGGUggCGCCGCGcauGUCg -3'
miRNA:   3'- agGCC-CC---UCGACCAa-GCGGCGCu--CGG- -5'
5137 5' -61.8 NC_001798.1 + 103001 0.68 0.566935
Target:  5'- gCCGGGG-GCccaGGUgCGCCcggccagcGCGAGCUc -3'
miRNA:   3'- aGGCCCCuCGa--CCAaGCGG--------CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 47860 0.68 0.566935
Target:  5'- cCCGGGG-GCcccgUGGg-CGCCGgCGGGCg -3'
miRNA:   3'- aGGCCCCuCG----ACCaaGCGGC-GCUCGg -5'
5137 5' -61.8 NC_001798.1 + 147225 0.68 0.566935
Target:  5'- cCCGGcGGAGCgcgGGggCcccgggGCCcCGGGCCg -3'
miRNA:   3'- aGGCC-CCUCGa--CCaaG------CGGcGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 123942 0.68 0.564048
Target:  5'- gUCCGGGGGcCUGGUggcaccuccccggcgGCCGCauauacugcuGGGCCa -3'
miRNA:   3'- -AGGCCCCUcGACCAag-------------CGGCG----------CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 144584 0.68 0.557327
Target:  5'- -aCGGGcGGCUGGguggcgaggggcUUCGaCUGCGAGCUc -3'
miRNA:   3'- agGCCCcUCGACC------------AAGC-GGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 26360 0.68 0.557327
Target:  5'- cCCGGcGGAGCUGcGcggGCCGCG-GCg -3'
miRNA:   3'- aGGCC-CCUCGAC-CaagCGGCGCuCGg -5'
5137 5' -61.8 NC_001798.1 + 153756 0.68 0.557327
Target:  5'- gCCaGGuGGGGCggaagGGggCGCUGCG-GCCc -3'
miRNA:   3'- aGG-CC-CCUCGa----CCaaGCGGCGCuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.