miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 25873 0.66 0.654564
Target:  5'- gCCGcGGA-CUGGccCGCCGaCGGGCCc -3'
miRNA:   3'- aGGCcCCUcGACCaaGCGGC-GCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 97576 0.66 0.644801
Target:  5'- -aCGGGGAGCgcg---GCCcCGAGCCa -3'
miRNA:   3'- agGCCCCUCGaccaagCGGcGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 79247 0.66 0.644801
Target:  5'- cCUGGGGGGcCUGcuggcggaGUUCGaCGCGgcGGCCg -3'
miRNA:   3'- aGGCCCCUC-GAC--------CAAGCgGCGC--UCGG- -5'
5137 5' -61.8 NC_001798.1 + 97230 0.66 0.644801
Target:  5'- gCCGuGGAGCUGGcgcugUUCggGCgGCGGGCg -3'
miRNA:   3'- aGGCcCCUCGACC-----AAG--CGgCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 31542 0.66 0.64187
Target:  5'- cCCGGGGGGggagguCUgccacagucgucggGGcgCGCCGCGcGCCc -3'
miRNA:   3'- aGGCCCCUC------GA--------------CCaaGCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 24842 0.67 0.635029
Target:  5'- gCCGGcGGcAGCgaggccgccgUGGccgccgugcgCGCCGUGAGCCu -3'
miRNA:   3'- aGGCC-CC-UCG----------ACCaa--------GCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 4406 0.67 0.634051
Target:  5'- gUCGGcGGGGCgccgGGggUCGCgGCGAcaggcugGCCa -3'
miRNA:   3'- aGGCC-CCUCGa---CCa-AGCGgCGCU-------CGG- -5'
5137 5' -61.8 NC_001798.1 + 97535 0.67 0.629164
Target:  5'- --gGGGGGGCggaggcguggcgcgGGgaCGcCCGCGAGCg -3'
miRNA:   3'- aggCCCCUCGa-------------CCaaGC-GGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 42560 0.67 0.625254
Target:  5'- gUCCGGuucGCUGGgcgUCGCCGCuGGUa -3'
miRNA:   3'- -AGGCCccuCGACCa--AGCGGCGcUCGg -5'
5137 5' -61.8 NC_001798.1 + 106063 0.67 0.619391
Target:  5'- gUCGGGGAGgggggccuuugcgguCUGGcggUCGCgGCGAcccggcGCCg -3'
miRNA:   3'- aGGCCCCUC---------------GACCa--AGCGgCGCU------CGG- -5'
5137 5' -61.8 NC_001798.1 + 57352 0.67 0.619391
Target:  5'- gCgGGuGGAGUUGGgaaaccggcaucggaUUUGCaccCGCGAGCCg -3'
miRNA:   3'- aGgCC-CCUCGACC---------------AAGCG---GCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 12701 0.67 0.615484
Target:  5'- cCCGGGuuGCUGGgggCGgCGgGGGCg -3'
miRNA:   3'- aGGCCCcuCGACCaa-GCgGCgCUCGg -5'
5137 5' -61.8 NC_001798.1 + 94002 0.67 0.615484
Target:  5'- cCUGGGGAgGCUGGagacgauuaUCGgcaaCCGCGAGgCCc -3'
miRNA:   3'- aGGCCCCU-CGACCa--------AGC----GGCGCUC-GG- -5'
5137 5' -61.8 NC_001798.1 + 102653 0.67 0.615484
Target:  5'- -gCGGaGGGGCcGGggCGCC-CGAuGCCg -3'
miRNA:   3'- agGCC-CCUCGaCCaaGCGGcGCU-CGG- -5'
5137 5' -61.8 NC_001798.1 + 153683 0.67 0.615484
Target:  5'- -gCGGGGAcGCggGGgcCGCCGCcGGCg -3'
miRNA:   3'- agGCCCCU-CGa-CCaaGCGGCGcUCGg -5'
5137 5' -61.8 NC_001798.1 + 86087 0.67 0.605726
Target:  5'- gUCGGGGccccGGCUGcGcgcCGCCGCGGacGCCc -3'
miRNA:   3'- aGGCCCC----UCGAC-Caa-GCGGCGCU--CGG- -5'
5137 5' -61.8 NC_001798.1 + 139051 0.67 0.605726
Target:  5'- gCCGcuGcGGCUGGag-GCCGCGGGCCa -3'
miRNA:   3'- aGGCc-CcUCGACCaagCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 79541 0.67 0.605726
Target:  5'- cCCGGGGcccCUGGU--GCUGCGugaGGCCg -3'
miRNA:   3'- aGGCCCCuc-GACCAagCGGCGC---UCGG- -5'
5137 5' -61.8 NC_001798.1 + 27148 0.67 0.605726
Target:  5'- -aCGGGGcGCgggagggagGGgcUGCUGCGAGCUc -3'
miRNA:   3'- agGCCCCuCGa--------CCaaGCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 20513 0.67 0.605726
Target:  5'- gCCGGGGc-CUGGgguugCGCCGCGcggauaGGUCu -3'
miRNA:   3'- aGGCCCCucGACCaa---GCGGCGC------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.