Results 41 - 60 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5137 | 5' | -61.8 | NC_001798.1 | + | 35436 | 0.66 | 0.702985 |
Target: 5'- -gCGGGaGGCgUGGgccgcuggCGCCGCG-GCCc -3' miRNA: 3'- agGCCCcUCG-ACCaa------GCGGCGCuCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 74410 | 0.66 | 0.702985 |
Target: 5'- gCCGGcGGAcCUGac-CGCCGCG-GCCc -3' miRNA: 3'- aGGCC-CCUcGACcaaGCGGCGCuCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 76928 | 0.66 | 0.702985 |
Target: 5'- gUCCGGGGcccccccccggaAGUcacGGcggCGCUGCGGGCg -3' miRNA: 3'- -AGGCCCC------------UCGa--CCaa-GCGGCGCUCGg -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 78337 | 0.66 | 0.702985 |
Target: 5'- aCCGcGGAGCUGGUcCGgaCCG-GGGUCa -3' miRNA: 3'- aGGCcCCUCGACCAaGC--GGCgCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 154515 | 0.66 | 0.702985 |
Target: 5'- gCCGcGGGGCUGccUUC-CCGCGGGCg -3' miRNA: 3'- aGGCcCCUCGACc-AAGcGGCGCUCGg -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 43722 | 0.66 | 0.693379 |
Target: 5'- -gCGGGGGGCUGaa--GCacucaaaGUGGGCCa -3' miRNA: 3'- agGCCCCUCGACcaagCGg------CGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 43022 | 0.66 | 0.693379 |
Target: 5'- cCCGGGGggAGCgcgGGgccccgggCGCaaaugcggcgCGUGAGCCg -3' miRNA: 3'- aGGCCCC--UCGa--CCaa------GCG----------GCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 75126 | 0.66 | 0.674034 |
Target: 5'- gUCCGGGcaGGGC-GGcggCGacgacgggcCCGCGAGCCc -3' miRNA: 3'- -AGGCCC--CUCGaCCaa-GC---------GGCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 98117 | 0.66 | 0.674034 |
Target: 5'- -gCGGGGGGUUcGggCGCUGauuGGGCCg -3' miRNA: 3'- agGCCCCUCGAcCaaGCGGCg--CUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 103276 | 0.66 | 0.674034 |
Target: 5'- cCCGGGaGAGCgcgGGUcCGCgGCGcucaaaaauAGCg -3' miRNA: 3'- aGGCCC-CUCGa--CCAaGCGgCGC---------UCGg -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 114883 | 0.66 | 0.674034 |
Target: 5'- -aCGGGGuGCUGGUcaccacCGCCGCcaucaaacaGcGCCu -3' miRNA: 3'- agGCCCCuCGACCAa-----GCGGCG---------CuCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 136670 | 0.66 | 0.674034 |
Target: 5'- -aCGGGGGGCggauuGUUgGCCagcagguaGUGGGCCa -3' miRNA: 3'- agGCCCCUCGac---CAAgCGG--------CGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 32549 | 0.66 | 0.674034 |
Target: 5'- -aCGGGGAacgugGC-GGaccUGCUGCGGGCCg -3' miRNA: 3'- agGCCCCU-----CGaCCaa-GCGGCGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 25609 | 0.66 | 0.676945 |
Target: 5'- gCCGGGG-GCgggccccccccggagUGGUcCGCCgagcgcgGCGGGCUg -3' miRNA: 3'- aGGCCCCuCG---------------ACCAaGCGG-------CGCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 27218 | 0.66 | 0.683726 |
Target: 5'- cCCGGGGcggGGCgcggGGgaggCgGCCGCGggggaggcGGCCg -3' miRNA: 3'- aGGCCCC---UCGa---CCaa--G-CGGCGC--------UCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 71114 | 0.66 | 0.683726 |
Target: 5'- cCCGGGGAcGCUGauggCGCgCGUGcggacggacgcGGCCg -3' miRNA: 3'- aGGCCCCU-CGACcaa-GCG-GCGC-----------UCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 91356 | 0.66 | 0.683726 |
Target: 5'- cCCGGGGgaAGCcGGgcCGcCCGCGGcacaaaacaucGCCg -3' miRNA: 3'- aGGCCCC--UCGaCCaaGC-GGCGCU-----------CGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 16229 | 0.66 | 0.683726 |
Target: 5'- gUgGGGGGGC-GGUgggGCCG-GGGCCc -3' miRNA: 3'- aGgCCCCUCGaCCAag-CGGCgCUCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 114084 | 0.66 | 0.683726 |
Target: 5'- cCCGGGuuaCcGGUaCGCCGCG-GCCa -3' miRNA: 3'- aGGCCCcucGaCCAaGCGGCGCuCGG- -5' |
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5137 | 5' | -61.8 | NC_001798.1 | + | 29894 | 0.66 | 0.693379 |
Target: 5'- cCCGGcugcGGGUUGGgggUgGUCGCGGGCg -3' miRNA: 3'- aGGCCc---CUCGACCa--AgCGGCGCUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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