miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 107415 0.7 0.455774
Target:  5'- aCUGGGGccGGCUgacGGgggUCGCCGCG-GCg -3'
miRNA:   3'- aGGCCCC--UCGA---CCa--AGCGGCGCuCGg -5'
5137 5' -61.8 NC_001798.1 + 85284 0.7 0.455774
Target:  5'- uUCgGGGGGGCgggggccggGGUcCGCCcGCG-GCCc -3'
miRNA:   3'- -AGgCCCCUCGa--------CCAaGCGG-CGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 40823 0.7 0.455774
Target:  5'- cCUGGGGGccGCUGGUUCcGCguuuuUGgGGGCCg -3'
miRNA:   3'- aGGCCCCU--CGACCAAG-CG-----GCgCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 24893 0.7 0.455774
Target:  5'- gCCGGGGccCUGGgcccggcgcUGCCGCgGAGCCc -3'
miRNA:   3'- aGGCCCCucGACCaa-------GCGGCG-CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 28626 0.7 0.455774
Target:  5'- aCgGGGGucCUGGgcgCGCgaGCGGGCCg -3'
miRNA:   3'- aGgCCCCucGACCaa-GCGg-CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 36274 0.7 0.464617
Target:  5'- cCCGGGGugggcGGCgggggGGggUGCCGUGGGUg -3'
miRNA:   3'- aGGCCCC-----UCGa----CCaaGCGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 82005 0.7 0.464617
Target:  5'- cCCGGGG-GCgaccgcCGCCGCG-GCCg -3'
miRNA:   3'- aGGCCCCuCGaccaa-GCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 26471 0.7 0.464617
Target:  5'- cCCGcaGAuacGCUGGgcgUCgGCCGCGGGCCg -3'
miRNA:   3'- aGGCccCU---CGACCa--AG-CGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 26505 0.69 0.473549
Target:  5'- -gCGGGGAcgguGCUGGc-CGCgGCGGGCg -3'
miRNA:   3'- agGCCCCU----CGACCaaGCGgCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 2471 0.69 0.48166
Target:  5'- gUCGGGGcccucggcgggccGGCgGGUcagCGCCGCGGGgCg -3'
miRNA:   3'- aGGCCCC-------------UCGaCCAa--GCGGCGCUCgG- -5'
5137 5' -61.8 NC_001798.1 + 25254 0.69 0.482565
Target:  5'- cCCGcaGGGcGGCUGG--CGCCGCcAGCCg -3'
miRNA:   3'- aGGC--CCC-UCGACCaaGCGGCGcUCGG- -5'
5137 5' -61.8 NC_001798.1 + 98565 0.69 0.482565
Target:  5'- -gUGGGGGcGCUGGUg-GCCGCGguggcgucggcGGCCc -3'
miRNA:   3'- agGCCCCU-CGACCAagCGGCGC-----------UCGG- -5'
5137 5' -61.8 NC_001798.1 + 98271 0.69 0.482565
Target:  5'- -gCGGGGAGCuUGaGUUgCGCCGCcccgacugcAGCCg -3'
miRNA:   3'- agGCCCCUCG-AC-CAA-GCGGCGc--------UCGG- -5'
5137 5' -61.8 NC_001798.1 + 20772 0.69 0.491664
Target:  5'- -gCGGGGAGCgacGGcgccCGCCGCGuaGGUCu -3'
miRNA:   3'- agGCCCCUCGa--CCaa--GCGGCGC--UCGG- -5'
5137 5' -61.8 NC_001798.1 + 9170 0.69 0.491664
Target:  5'- gCCGGGGGGCagGGUcucuggcgggUCcCCGCGuGCg -3'
miRNA:   3'- aGGCCCCUCGa-CCA----------AGcGGCGCuCGg -5'
5137 5' -61.8 NC_001798.1 + 4116 0.69 0.491664
Target:  5'- cCUGGGcGGGCUcggccGGggCGCCGCccccgGGGCCc -3'
miRNA:   3'- aGGCCC-CUCGA-----CCaaGCGGCG-----CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 23643 0.69 0.500842
Target:  5'- aCCGcGGGccgcCUGGagCGCCGCcGGGCCc -3'
miRNA:   3'- aGGC-CCCuc--GACCaaGCGGCG-CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 42196 0.69 0.500842
Target:  5'- -gCGGGGcGUgaaagUGGaagCGCCGCGGGUCg -3'
miRNA:   3'- agGCCCCuCG-----ACCaa-GCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 152198 0.69 0.513815
Target:  5'- cCCGGGGGucgcccucucaccguGCcgggGGUcUGCCGCGgcGGCCg -3'
miRNA:   3'- aGGCCCCU---------------CGa---CCAaGCGGCGC--UCGG- -5'
5137 5' -61.8 NC_001798.1 + 149446 0.69 0.516613
Target:  5'- cUCGGGGAGCagGGUgcggCggcuccacgcggggGCCGCG-GCCc -3'
miRNA:   3'- aGGCCCCUCGa-CCAa---G--------------CGGCGCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.