miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 26556 0.72 0.365045
Target:  5'- gCCGcGGGGCUGGccaCGCCgccgaggcGCGAGCCc -3'
miRNA:   3'- aGGCcCCUCGACCaa-GCGG--------CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 27148 0.67 0.605726
Target:  5'- -aCGGGGcGCgggagggagGGgcUGCUGCGAGCUc -3'
miRNA:   3'- agGCCCCuCGa--------CCaaGCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 27218 0.66 0.683726
Target:  5'- cCCGGGGcggGGCgcggGGgaggCgGCCGCGggggaggcGGCCg -3'
miRNA:   3'- aGGCCCC---UCGa---CCaa--G-CGGCGC--------UCGG- -5'
5137 5' -61.8 NC_001798.1 + 27284 0.78 0.145225
Target:  5'- -gCGGGGGGgaGGggCuGCCGCGAGCUc -3'
miRNA:   3'- agGCCCCUCgaCCaaG-CGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 28626 0.7 0.455774
Target:  5'- aCgGGGGucCUGGgcgCGCgaGCGGGCCg -3'
miRNA:   3'- aGgCCCCucGACCaa-GCGg-CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 28795 0.67 0.58627
Target:  5'- -gCGGcGGcGCgcgGGUccuccgcCGCCGCGGGCCc -3'
miRNA:   3'- agGCC-CCuCGa--CCAa------GCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 29894 0.66 0.693379
Target:  5'- cCCGGcugcGGGUUGGgggUgGUCGCGGGCg -3'
miRNA:   3'- aGGCCc---CUCGACCa--AgCGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 31542 0.66 0.64187
Target:  5'- cCCGGGGGGggagguCUgccacagucgucggGGcgCGCCGCGcGCCc -3'
miRNA:   3'- aGGCCCCUC------GA--------------CCaaGCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 32237 0.68 0.566935
Target:  5'- gCgGGcGGGGCUGGUgggagCGUCGCGuccGCg -3'
miRNA:   3'- aGgCC-CCUCGACCAa----GCGGCGCu--CGg -5'
5137 5' -61.8 NC_001798.1 + 32549 0.66 0.674034
Target:  5'- -aCGGGGAacgugGC-GGaccUGCUGCGGGCCg -3'
miRNA:   3'- agGCCCCU-----CGaCCaa-GCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 32773 0.68 0.538258
Target:  5'- gUCUcGGGAGCagGGcgCGCCcGCGccGGCCg -3'
miRNA:   3'- -AGGcCCCUCGa-CCaaGCGG-CGC--UCGG- -5'
5137 5' -61.8 NC_001798.1 + 35436 0.66 0.702985
Target:  5'- -gCGGGaGGCgUGGgccgcuggCGCCGCG-GCCc -3'
miRNA:   3'- agGCCCcUCG-ACCaa------GCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 36113 0.7 0.421344
Target:  5'- --gGGGGcccGGCUGcGUcUCGCCGCGAucccGCCg -3'
miRNA:   3'- aggCCCC---UCGAC-CA-AGCGGCGCU----CGG- -5'
5137 5' -61.8 NC_001798.1 + 36274 0.7 0.464617
Target:  5'- cCCGGGGugggcGGCgggggGGggUGCCGUGGGUg -3'
miRNA:   3'- aGGCCCC-----UCGa----CCaaGCGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 36331 0.68 0.536363
Target:  5'- gCCGGGGcucGCUGGUcCGCCGaaguaaagaaaaGAucGCCa -3'
miRNA:   3'- aGGCCCCu--CGACCAaGCGGCg-----------CU--CGG- -5'
5137 5' -61.8 NC_001798.1 + 39473 0.71 0.396575
Target:  5'- --gGGGGGGcCUGGcgCgugccucgugGCCGCGGGCCc -3'
miRNA:   3'- aggCCCCUC-GACCaaG----------CGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 39627 0.71 0.380592
Target:  5'- gCCGGcGGGGUuuUGGUguggagucggCGCCGCcgGGGCCg -3'
miRNA:   3'- aGGCC-CCUCG--ACCAa---------GCGGCG--CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 39902 0.68 0.528806
Target:  5'- gCCGGGGGaccuUUGGgaaCGCCGCGucgauGGCCu -3'
miRNA:   3'- aGGCCCCUc---GACCaa-GCGGCGC-----UCGG- -5'
5137 5' -61.8 NC_001798.1 + 40823 0.7 0.455774
Target:  5'- cCUGGGGGccGCUGGUUCcGCguuuuUGgGGGCCg -3'
miRNA:   3'- aGGCCCCU--CGACCAAG-CG-----GCgCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 42196 0.69 0.500842
Target:  5'- -gCGGGGcGUgaaagUGGaagCGCCGCGGGUCg -3'
miRNA:   3'- agGCCCCuCG-----ACCaa-GCGGCGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.