miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 18282 0.69 0.519417
Target:  5'- cUCCGcGGGGGUauaaaaGGUgcUCGCCGgGAagGCCg -3'
miRNA:   3'- -AGGC-CCCUCGa-----CCA--AGCGGCgCU--CGG- -5'
5137 5' -61.8 NC_001798.1 + 19876 0.73 0.313475
Target:  5'- gUUCGGcGGAGCUGGUaUCGgcgaccaCCGCGgacAGCCa -3'
miRNA:   3'- -AGGCC-CCUCGACCA-AGC-------GGCGC---UCGG- -5'
5137 5' -61.8 NC_001798.1 + 20513 0.67 0.605726
Target:  5'- gCCGGGGc-CUGGgguugCGCCGCGcggauaGGUCu -3'
miRNA:   3'- aGGCCCCucGACCaa---GCGGCGC------UCGG- -5'
5137 5' -61.8 NC_001798.1 + 20772 0.69 0.491664
Target:  5'- -gCGGGGAGCgacGGcgccCGCCGCGuaGGUCu -3'
miRNA:   3'- agGCCCCUCGa--CCaa--GCGGCGC--UCGG- -5'
5137 5' -61.8 NC_001798.1 + 22399 0.66 0.654564
Target:  5'- cCCGGcGAGCcGGggCGCgGCGGcGUCg -3'
miRNA:   3'- aGGCCcCUCGaCCaaGCGgCGCU-CGG- -5'
5137 5' -61.8 NC_001798.1 + 22976 0.68 0.547766
Target:  5'- gUCCGGGGAGgc----CGUCGaCGAGCCu -3'
miRNA:   3'- -AGGCCCCUCgaccaaGCGGC-GCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 23643 0.69 0.500842
Target:  5'- aCCGcGGGccgcCUGGagCGCCGCcGGGCCc -3'
miRNA:   3'- aGGC-CCCuc--GACCaaGCGGCG-CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 23715 0.68 0.551585
Target:  5'- gCCGGGcggccccggcgggucGAGCUGGa-CGCCGaCGcGGCCu -3'
miRNA:   3'- aGGCCC---------------CUCGACCaaGCGGC-GC-UCGG- -5'
5137 5' -61.8 NC_001798.1 + 23877 0.67 0.58627
Target:  5'- cUCUGGGGGGCgcccgaGGcggaggaGgCGCGGGCCc -3'
miRNA:   3'- -AGGCCCCUCGa-----CCaag----CgGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 24842 0.67 0.635029
Target:  5'- gCCGGcGGcAGCgaggccgccgUGGccgccgugcgCGCCGUGAGCCu -3'
miRNA:   3'- aGGCC-CC-UCG----------ACCaa--------GCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 24893 0.7 0.455774
Target:  5'- gCCGGGGccCUGGgcccggcgcUGCCGCgGAGCCc -3'
miRNA:   3'- aGGCCCCucGACCaa-------GCGGCG-CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 25254 0.69 0.482565
Target:  5'- cCCGcaGGGcGGCUGG--CGCCGCcAGCCg -3'
miRNA:   3'- aGGC--CCC-UCGACCaaGCGGCGcUCGG- -5'
5137 5' -61.8 NC_001798.1 + 25581 0.68 0.576584
Target:  5'- gCCGGGcGAGgacc-UgGCCGCGGGCCg -3'
miRNA:   3'- aGGCCC-CUCgaccaAgCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 25609 0.66 0.676945
Target:  5'- gCCGGGG-GCgggccccccccggagUGGUcCGCCgagcgcgGCGGGCUg -3'
miRNA:   3'- aGGCCCCuCG---------------ACCAaGCGG-------CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 25815 0.71 0.404727
Target:  5'- cCUGGGGcuGCUGGccggCGCCuGCGAccGCCg -3'
miRNA:   3'- aGGCCCCu-CGACCaa--GCGG-CGCU--CGG- -5'
5137 5' -61.8 NC_001798.1 + 25873 0.66 0.654564
Target:  5'- gCCGcGGA-CUGGccCGCCGaCGGGCCc -3'
miRNA:   3'- aGGCcCCUcGACCaaGCGGC-GCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 26293 0.67 0.595986
Target:  5'- gCUGGGGc-CUGGgcgCGCCGCugcGGCCc -3'
miRNA:   3'- aGGCCCCucGACCaa-GCGGCGc--UCGG- -5'
5137 5' -61.8 NC_001798.1 + 26360 0.68 0.557327
Target:  5'- cCCGGcGGAGCUGcGcggGCCGCG-GCg -3'
miRNA:   3'- aGGCC-CCUCGAC-CaagCGGCGCuCGg -5'
5137 5' -61.8 NC_001798.1 + 26471 0.7 0.464617
Target:  5'- cCCGcaGAuacGCUGGgcgUCgGCCGCGGGCCg -3'
miRNA:   3'- aGGCccCU---CGACCa--AG-CGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 26505 0.69 0.473549
Target:  5'- -gCGGGGAcgguGCUGGc-CGCgGCGGGCg -3'
miRNA:   3'- agGCCCCU----CGACCaaGCGgCGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.