miRNA display CGI


Results 21 - 40 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 136670 0.66 0.674034
Target:  5'- -aCGGGGGGCggauuGUUgGCCagcagguaGUGGGCCa -3'
miRNA:   3'- agGCCCCUCGac---CAAgCGG--------CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 135492 0.67 0.605726
Target:  5'- cCCGGGGAcGC-GGa-CGCCGCGcacGGCg -3'
miRNA:   3'- aGGCCCCU-CGaCCaaGCGGCGC---UCGg -5'
5137 5' -61.8 NC_001798.1 + 135313 0.66 0.697228
Target:  5'- cCCGGGccguGCUGGagCGCCuggugccggacgcguGCGAcGCCu -3'
miRNA:   3'- aGGCCCcu--CGACCaaGCGG---------------CGCU-CGG- -5'
5137 5' -61.8 NC_001798.1 + 134984 0.66 0.654564
Target:  5'- cCUGGGGGcCUGGccCGCgGUGGGCg -3'
miRNA:   3'- aGGCCCCUcGACCaaGCGgCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 132202 0.75 0.228923
Target:  5'- cUUCGGGGAGCUGGa--GgCGCGccuGGCCg -3'
miRNA:   3'- -AGGCCCCUCGACCaagCgGCGC---UCGG- -5'
5137 5' -61.8 NC_001798.1 + 129152 1.1 0.000814
Target:  5'- cUCCGGGGAGCUGGUUCGCCGCGAGCCc -3'
miRNA:   3'- -AGGCCCCUCGACCAAGCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 126677 0.71 0.372763
Target:  5'- aUCCGGGaaaaaGAG-UGGUUUGCCGUgGAGCUc -3'
miRNA:   3'- -AGGCCC-----CUCgACCAAGCGGCG-CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 123942 0.68 0.564048
Target:  5'- gUCCGGGGGcCUGGUggcaccuccccggcgGCCGCauauacugcuGGGCCa -3'
miRNA:   3'- -AGGCCCCUcGACCAag-------------CGGCG----------CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 122130 0.66 0.674034
Target:  5'- gCCgGGGGGGCccccGG---GCCGCGGGCg -3'
miRNA:   3'- aGG-CCCCUCGa---CCaagCGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 115317 0.71 0.396575
Target:  5'- gCCGGGGAcCUGGUgccCGCCcCcGGCCa -3'
miRNA:   3'- aGGCCCCUcGACCAa--GCGGcGcUCGG- -5'
5137 5' -61.8 NC_001798.1 + 114883 0.66 0.674034
Target:  5'- -aCGGGGuGCUGGUcaccacCGCCGCcaucaaacaGcGCCu -3'
miRNA:   3'- agGCCCCuCGACCAa-----GCGGCG---------CuCGG- -5'
5137 5' -61.8 NC_001798.1 + 114757 0.68 0.538258
Target:  5'- uUCCuGGGcaaGGC-GGccaUCGCCGCGAGgCCa -3'
miRNA:   3'- -AGGcCCC---UCGaCCa--AGCGGCGCUC-GG- -5'
5137 5' -61.8 NC_001798.1 + 114084 0.66 0.683726
Target:  5'- cCCGGGuuaCcGGUaCGCCGCG-GCCa -3'
miRNA:   3'- aGGCCCcucGaCCAaGCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 113306 0.77 0.164071
Target:  5'- gCCGcuGGAGCUGGUg-GCCGCGGGCa -3'
miRNA:   3'- aGGCc-CCUCGACCAagCGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 112027 0.67 0.59988
Target:  5'- cCCGGucaccagcacccccGGGCUGGUUCGCaGCGAGgUg -3'
miRNA:   3'- aGGCCc-------------CUCGACCAAGCGgCGCUCgG- -5'
5137 5' -61.8 NC_001798.1 + 109373 0.7 0.429805
Target:  5'- cCCGGGGAGCaGcGg--GCUGCGcGGCCg -3'
miRNA:   3'- aGGCCCCUCGaC-CaagCGGCGC-UCGG- -5'
5137 5' -61.8 NC_001798.1 + 108856 0.66 0.664311
Target:  5'- -aCGGGcGGGCUGGcgUUCgGgUGCGAcGCCg -3'
miRNA:   3'- agGCCC-CUCGACC--AAG-CgGCGCU-CGG- -5'
5137 5' -61.8 NC_001798.1 + 108131 0.7 0.455774
Target:  5'- aUgGGGGucCUGGUgggcgUUGCCGgGGGCCa -3'
miRNA:   3'- aGgCCCCucGACCA-----AGCGGCgCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 107415 0.7 0.455774
Target:  5'- aCUGGGGccGGCUgacGGgggUCGCCGCG-GCg -3'
miRNA:   3'- aGGCCCC--UCGA---CCa--AGCGGCGCuCGg -5'
5137 5' -61.8 NC_001798.1 + 106063 0.67 0.619391
Target:  5'- gUCGGGGAGgggggccuuugcgguCUGGcggUCGCgGCGAcccggcGCCg -3'
miRNA:   3'- aGGCCCCUC---------------GACCa--AGCGgCGCU------CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.