miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 154515 0.66 0.702985
Target:  5'- gCCGcGGGGCUGccUUC-CCGCGGGCg -3'
miRNA:   3'- aGGCcCCUCGACc-AAGcGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 154073 0.73 0.281218
Target:  5'- gCCGGGGcgcggcacGGCUGGagCGCCGgGgcgcGGCCg -3'
miRNA:   3'- aGGCCCC--------UCGACCaaGCGGCgC----UCGG- -5'
5137 5' -61.8 NC_001798.1 + 153870 0.7 0.455774
Target:  5'- cUCGGGGGGCU-GUUCGCCcacucuGCGucgucguuGCCg -3'
miRNA:   3'- aGGCCCCUCGAcCAAGCGG------CGCu-------CGG- -5'
5137 5' -61.8 NC_001798.1 + 153756 0.68 0.557327
Target:  5'- gCCaGGuGGGGCggaagGGggCGCUGCG-GCCc -3'
miRNA:   3'- aGG-CC-CCUCGa----CCaaGCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 153683 0.67 0.615484
Target:  5'- -gCGGGGAcGCggGGgcCGCCGCcGGCg -3'
miRNA:   3'- agGCCCCU-CGa-CCaaGCGGCGcUCGg -5'
5137 5' -61.8 NC_001798.1 + 152198 0.69 0.513815
Target:  5'- cCCGGGGGucgcccucucaccguGCcgggGGUcUGCCGCGgcGGCCg -3'
miRNA:   3'- aGGCCCCU---------------CGa---CCAaGCGGCGC--UCGG- -5'
5137 5' -61.8 NC_001798.1 + 151612 0.66 0.663337
Target:  5'- gCCGGGGgccgGGCcgGGggcgUgGCCGCGuccaucaGGCCc -3'
miRNA:   3'- aGGCCCC----UCGa-CCa---AgCGGCGC-------UCGG- -5'
5137 5' -61.8 NC_001798.1 + 150842 0.72 0.34256
Target:  5'- gCCaGGGGGCgccGGUcgggUCGCgGCGGGCUg -3'
miRNA:   3'- aGGcCCCUCGa--CCA----AGCGgCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 150210 0.72 0.33529
Target:  5'- aCCGGGGGuGUUGGU--GCCGCGGGg- -3'
miRNA:   3'- aGGCCCCU-CGACCAagCGGCGCUCgg -5'
5137 5' -61.8 NC_001798.1 + 150083 0.68 0.547766
Target:  5'- cCUGGGGGGCgaGGggCGagCGCGGGgCg -3'
miRNA:   3'- aGGCCCCUCGa-CCaaGCg-GCGCUCgG- -5'
5137 5' -61.8 NC_001798.1 + 150001 0.66 0.654564
Target:  5'- gCCGGGGcgAGC-GGcccgUgGCCGCGGucGCCc -3'
miRNA:   3'- aGGCCCC--UCGaCCa---AgCGGCGCU--CGG- -5'
5137 5' -61.8 NC_001798.1 + 149446 0.69 0.516613
Target:  5'- cUCGGGGAGCagGGUgcggCggcuccacgcggggGCCGCG-GCCc -3'
miRNA:   3'- aGGCCCCUCGa-CCAa---G--------------CGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 147501 0.73 0.307346
Target:  5'- cUCCGGGGGGggGGggCGCCuGCGuguGUCu -3'
miRNA:   3'- -AGGCCCCUCgaCCaaGCGG-CGCu--CGG- -5'
5137 5' -61.8 NC_001798.1 + 147225 0.68 0.566935
Target:  5'- cCCGGcGGAGCgcgGGggCcccgggGCCcCGGGCCg -3'
miRNA:   3'- aGGCC-CCUCGa--CCaaG------CGGcGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 144584 0.68 0.557327
Target:  5'- -aCGGGcGGCUGGguggcgaggggcUUCGaCUGCGAGCUc -3'
miRNA:   3'- agGCCCcUCGACC------------AAGC-GGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 141457 0.7 0.454895
Target:  5'- uUCCGGGGcugcgAGCUgcugaccGGcUCGCCGCGcggggGGCUg -3'
miRNA:   3'- -AGGCCCC-----UCGA-------CCaAGCGGCGC-----UCGG- -5'
5137 5' -61.8 NC_001798.1 + 139289 0.66 0.654564
Target:  5'- cUCGGGG-GCgcauagCGCCGCGucGCCg -3'
miRNA:   3'- aGGCCCCuCGaccaa-GCGGCGCu-CGG- -5'
5137 5' -61.8 NC_001798.1 + 139051 0.67 0.605726
Target:  5'- gCCGcuGcGGCUGGag-GCCGCGGGCCa -3'
miRNA:   3'- aGGCc-CcUCGACCaagCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 138883 0.71 0.404727
Target:  5'- aUuuGGGGaAGCUGG-UCGguCCGCuuGGGCCg -3'
miRNA:   3'- -AggCCCC-UCGACCaAGC--GGCG--CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 137487 0.68 0.528806
Target:  5'- --aGGGGGGCcgGGgcagaGCCGCGuGCUg -3'
miRNA:   3'- aggCCCCUCGa-CCaag--CGGCGCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.