miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 85995 0.72 0.357438
Target:  5'- gCCGGGGcGCUGG--CGCagggggGUGAGCCg -3'
miRNA:   3'- aGGCCCCuCGACCaaGCGg-----CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 15186 0.72 0.365045
Target:  5'- gUUCGGGGGGUgggGGg--GCUgGCGAGCCg -3'
miRNA:   3'- -AGGCCCCUCGa--CCaagCGG-CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 26556 0.72 0.365045
Target:  5'- gCCGcGGGGCUGGccaCGCCgccgaggcGCGAGCCc -3'
miRNA:   3'- aGGCcCCUCGACCaa-GCGG--------CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 126677 0.71 0.372763
Target:  5'- aUCCGGGaaaaaGAG-UGGUUUGCCGUgGAGCUc -3'
miRNA:   3'- -AGGCCC-----CUCgACCAAGCGGCG-CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 2603 0.71 0.377447
Target:  5'- cUUCGGGGGGCgcGGggCGCCGCccggcggcgcccuGGCCg -3'
miRNA:   3'- -AGGCCCCUCGa-CCaaGCGGCGc------------UCGG- -5'
5137 5' -61.8 NC_001798.1 + 39627 0.71 0.380592
Target:  5'- gCCGGcGGGGUuuUGGUguggagucggCGCCGCcgGGGCCg -3'
miRNA:   3'- aGGCC-CCUCG--ACCAa---------GCGGCG--CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 115317 0.71 0.396575
Target:  5'- gCCGGGGAcCUGGUgccCGCCcCcGGCCa -3'
miRNA:   3'- aGGCCCCUcGACCAa--GCGGcGcUCGG- -5'
5137 5' -61.8 NC_001798.1 + 39473 0.71 0.396575
Target:  5'- --gGGGGGGcCUGGcgCgugccucgugGCCGCGGGCCc -3'
miRNA:   3'- aggCCCCUC-GACCaaG----------CGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 54382 0.71 0.396575
Target:  5'- aCCGGGGGGCcgcGGcgcggUCGgCGgGAGCUg -3'
miRNA:   3'- aGGCCCCUCGa--CCa----AGCgGCgCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 56410 0.71 0.404727
Target:  5'- cCCGcggcGGGGGCUGGUggcUGCCGUGGuGCUc -3'
miRNA:   3'- aGGC----CCCUCGACCAa--GCGGCGCU-CGG- -5'
5137 5' -61.8 NC_001798.1 + 25815 0.71 0.404727
Target:  5'- cCUGGGGcuGCUGGccggCGCCuGCGAccGCCg -3'
miRNA:   3'- aGGCCCCu-CGACCaa--GCGG-CGCU--CGG- -5'
5137 5' -61.8 NC_001798.1 + 138883 0.71 0.404727
Target:  5'- aUuuGGGGaAGCUGG-UCGguCCGCuuGGGCCg -3'
miRNA:   3'- -AggCCCC-UCGACCaAGC--GGCG--CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 36113 0.7 0.421344
Target:  5'- --gGGGGcccGGCUGcGUcUCGCCGCGAucccGCCg -3'
miRNA:   3'- aggCCCC---UCGAC-CA-AGCGGCGCU----CGG- -5'
5137 5' -61.8 NC_001798.1 + 69192 0.7 0.421344
Target:  5'- gUgGGGGAGgUcGGUggggUGCCGCaGGGCCa -3'
miRNA:   3'- aGgCCCCUCgA-CCAa---GCGGCG-CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 7326 0.7 0.429805
Target:  5'- cCCaGGGAGCcccgGGUUCcCCGaGAGCCc -3'
miRNA:   3'- aGGcCCCUCGa---CCAAGcGGCgCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 109373 0.7 0.429805
Target:  5'- cCCGGGGAGCaGcGg--GCUGCGcGGCCg -3'
miRNA:   3'- aGGCCCCUCGaC-CaagCGGCGC-UCGG- -5'
5137 5' -61.8 NC_001798.1 + 87193 0.7 0.447023
Target:  5'- -aCGGGcGGCUGGccaccgUCaGCCGCGAGgCCc -3'
miRNA:   3'- agGCCCcUCGACCa-----AG-CGGCGCUC-GG- -5'
5137 5' -61.8 NC_001798.1 + 141457 0.7 0.454895
Target:  5'- uUCCGGGGcugcgAGCUgcugaccGGcUCGCCGCGcggggGGCUg -3'
miRNA:   3'- -AGGCCCC-----UCGA-------CCaAGCGGCGC-----UCGG- -5'
5137 5' -61.8 NC_001798.1 + 107415 0.7 0.455774
Target:  5'- aCUGGGGccGGCUgacGGgggUCGCCGCG-GCg -3'
miRNA:   3'- aGGCCCC--UCGA---CCa--AGCGGCGCuCGg -5'
5137 5' -61.8 NC_001798.1 + 153870 0.7 0.455774
Target:  5'- cUCGGGGGGCU-GUUCGCCcacucuGCGucgucguuGCCg -3'
miRNA:   3'- aGGCCCCUCGAcCAAGCGG------CGCu-------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.