miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5137 5' -61.8 NC_001798.1 + 16229 0.66 0.683726
Target:  5'- gUgGGGGGGC-GGUgggGCCG-GGGCCc -3'
miRNA:   3'- aGgCCCCUCGaCCAag-CGGCgCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 114084 0.66 0.683726
Target:  5'- cCCGGGuuaCcGGUaCGCCGCG-GCCa -3'
miRNA:   3'- aGGCCCcucGaCCAaGCGGCGCuCGG- -5'
5137 5' -61.8 NC_001798.1 + 25609 0.66 0.676945
Target:  5'- gCCGGGG-GCgggccccccccggagUGGUcCGCCgagcgcgGCGGGCUg -3'
miRNA:   3'- aGGCCCCuCG---------------ACCAaGCGG-------CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 122130 0.66 0.674034
Target:  5'- gCCgGGGGGGCccccGG---GCCGCGGGCg -3'
miRNA:   3'- aGG-CCCCUCGa---CCaagCGGCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 52039 0.66 0.674034
Target:  5'- cCCGGGGuGCgcgcgcuccUGGggCGCgacuguCGCGuGGCCg -3'
miRNA:   3'- aGGCCCCuCG---------ACCaaGCG------GCGC-UCGG- -5'
5137 5' -61.8 NC_001798.1 + 75126 0.66 0.674034
Target:  5'- gUCCGGGcaGGGC-GGcggCGacgacgggcCCGCGAGCCc -3'
miRNA:   3'- -AGGCCC--CUCGaCCaa-GC---------GGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 98117 0.66 0.674034
Target:  5'- -gCGGGGGGUUcGggCGCUGauuGGGCCg -3'
miRNA:   3'- agGCCCCUCGAcCaaGCGGCg--CUCGG- -5'
5137 5' -61.8 NC_001798.1 + 103276 0.66 0.674034
Target:  5'- cCCGGGaGAGCgcgGGUcCGCgGCGcucaaaaauAGCg -3'
miRNA:   3'- aGGCCC-CUCGa--CCAaGCGgCGC---------UCGg -5'
5137 5' -61.8 NC_001798.1 + 114883 0.66 0.674034
Target:  5'- -aCGGGGuGCUGGUcaccacCGCCGCcaucaaacaGcGCCu -3'
miRNA:   3'- agGCCCCuCGACCAa-----GCGGCG---------CuCGG- -5'
5137 5' -61.8 NC_001798.1 + 136670 0.66 0.674034
Target:  5'- -aCGGGGGGCggauuGUUgGCCagcagguaGUGGGCCa -3'
miRNA:   3'- agGCCCCUCGac---CAAgCGG--------CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 32549 0.66 0.674034
Target:  5'- -aCGGGGAacgugGC-GGaccUGCUGCGGGCCg -3'
miRNA:   3'- agGCCCCU-----CGaCCaa-GCGGCGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 108856 0.66 0.664311
Target:  5'- -aCGGGcGGGCUGGcgUUCgGgUGCGAcGCCg -3'
miRNA:   3'- agGCCC-CUCGACC--AAG-CgGCGCU-CGG- -5'
5137 5' -61.8 NC_001798.1 + 105127 0.66 0.664311
Target:  5'- -aCGGGGAgGUUGGUaucguaUCGUagcgGCGGGUCg -3'
miRNA:   3'- agGCCCCU-CGACCA------AGCGg---CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 88036 0.66 0.664311
Target:  5'- gCCGGGGAggGCaGGgcCGCUggggggGCGGGCUc -3'
miRNA:   3'- aGGCCCCU--CGaCCaaGCGG------CGCUCGG- -5'
5137 5' -61.8 NC_001798.1 + 151612 0.66 0.663337
Target:  5'- gCCGGGGgccgGGCcgGGggcgUgGCCGCGuccaucaGGCCc -3'
miRNA:   3'- aGGCCCC----UCGa-CCa---AgCGGCGC-------UCGG- -5'
5137 5' -61.8 NC_001798.1 + 2541 0.66 0.65554
Target:  5'- -gCGGGGGGCgcggcccccgcgggaGGggCgGCCGCGGGgCg -3'
miRNA:   3'- agGCCCCUCGa--------------CCaaG-CGGCGCUCgG- -5'
5137 5' -61.8 NC_001798.1 + 22399 0.66 0.654564
Target:  5'- cCCGGcGAGCcGGggCGCgGCGGcGUCg -3'
miRNA:   3'- aGGCCcCUCGaCCaaGCGgCGCU-CGG- -5'
5137 5' -61.8 NC_001798.1 + 150001 0.66 0.654564
Target:  5'- gCCGGGGcgAGC-GGcccgUgGCCGCGGucGCCc -3'
miRNA:   3'- aGGCCCC--UCGaCCa---AgCGGCGCU--CGG- -5'
5137 5' -61.8 NC_001798.1 + 134984 0.66 0.654564
Target:  5'- cCUGGGGGcCUGGccCGCgGUGGGCg -3'
miRNA:   3'- aGGCCCCUcGACCaaGCGgCGCUCGg -5'
5137 5' -61.8 NC_001798.1 + 25873 0.66 0.654564
Target:  5'- gCCGcGGA-CUGGccCGCCGaCGGGCCc -3'
miRNA:   3'- aGGCcCCUcGACCaaGCGGC-GCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.