miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 30183 0.67 0.707919
Target:  5'- gGGGGACac---GGCGCGGgGGUccCGCCu -3'
miRNA:   3'- -CUCCUGgacuaCCGCGCCgCUA--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 65818 0.67 0.707919
Target:  5'- -cGGGCgagGAUGGCGCucacguugccGGUGAUgGCCc -3'
miRNA:   3'- cuCCUGga-CUACCGCG----------CCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 70927 0.67 0.707919
Target:  5'- uGAcGACCcccGAUcggGGCGCGGUGGUccCGCCg -3'
miRNA:   3'- -CUcCUGGa--CUA---CCGCGCCGCUA--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 151614 0.67 0.707919
Target:  5'- cGGGGGCCgggccGggGGCGUGGCcg-CGUCc -3'
miRNA:   3'- -CUCCUGGa----CuaCCGCGCCGcuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 154092 0.68 0.69814
Target:  5'- gGAGcGCCgg--GGCGCGGCcggCGCCg -3'
miRNA:   3'- -CUCcUGGacuaCCGCGCCGcuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 60967 0.68 0.69814
Target:  5'- -cGGGCCcGGaGGCGCGGCcguuuguGUCGCa -3'
miRNA:   3'- cuCCUGGaCUaCCGCGCCGc------UAGCGg -5'
5138 3' -59.2 NC_001798.1 + 66881 0.68 0.694213
Target:  5'- cGGGGCUUGGgaaaggccacgggGGCGgGGCcGUCGCUc -3'
miRNA:   3'- cUCCUGGACUa------------CCGCgCCGcUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 137671 0.68 0.688309
Target:  5'- cGGGGCCacGAaGGa--GGCGAUCGCCc -3'
miRNA:   3'- cUCCUGGa-CUaCCgcgCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 83977 0.68 0.688309
Target:  5'- cGAGGGCCUGcucggcGGCGCGacacagGAUcCGCCg -3'
miRNA:   3'- -CUCCUGGACua----CCGCGCcg----CUA-GCGG- -5'
5138 3' -59.2 NC_001798.1 + 64629 0.68 0.688309
Target:  5'- aGAGcGugUUGG-GGCGCaGCGucUCGCCg -3'
miRNA:   3'- -CUC-CugGACUaCCGCGcCGCu-AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 54728 0.68 0.688309
Target:  5'- -cGGACCUGggGGC-CGgacGCGGagGCCg -3'
miRNA:   3'- cuCCUGGACuaCCGcGC---CGCUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 124876 0.68 0.678433
Target:  5'- uGGGGACUagaaacacGGUGGCGCgcuGGCGGaagUGCCg -3'
miRNA:   3'- -CUCCUGGa-------CUACCGCG---CCGCUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 12258 0.68 0.669514
Target:  5'- uGGGGCCgcggacgaccaggccGGUGGCGCagacccacaGGCccagGAUCGCCa -3'
miRNA:   3'- cUCCUGGa--------------CUACCGCG---------CCG----CUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 135326 0.68 0.668521
Target:  5'- gGAGcGCCUGGUgccGGaCGCGuGCGA-CGCCu -3'
miRNA:   3'- -CUCcUGGACUA---CC-GCGC-CGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 125320 0.68 0.668521
Target:  5'- cGGGGGCCagGAacuccagcuUGGC-CGuGUGGUCGCCc -3'
miRNA:   3'- -CUCCUGGa-CU---------ACCGcGC-CGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 113343 0.68 0.668521
Target:  5'- -uGGACCgGAcGG-GCGGUGG-CGCCg -3'
miRNA:   3'- cuCCUGGaCUaCCgCGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 76660 0.68 0.668521
Target:  5'- cGAGGGCCaUGGaGGCGgccaagaugaCGGCGGagcUCGCUc -3'
miRNA:   3'- -CUCCUGG-ACUaCCGC----------GCCGCU---AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 3000 0.68 0.668521
Target:  5'- -cGGGCCccgggcgcGggGGCGCGGCGG--GCCg -3'
miRNA:   3'- cuCCUGGa-------CuaCCGCGCCGCUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 138527 0.68 0.665542
Target:  5'- cGGGGCacagccgCUGAacgGGCGaaucgaagaccaGGCGGUCGCCg -3'
miRNA:   3'- cUCCUG-------GACUa--CCGCg-----------CCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 148398 0.68 0.648621
Target:  5'- -cGGGCaggugUGcgGGCGgGGUGggCGCCg -3'
miRNA:   3'- cuCCUGg----ACuaCCGCgCCGCuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.