Results 41 - 60 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5138 | 3' | -59.2 | NC_001798.1 | + | 37577 | 0.67 | 0.746339 |
Target: 5'- -cGGuuuuuggGGUGGuCGCGGUGGUCGUCg -3' miRNA: 3'- cuCCugga---CUACC-GCGCCGCUAGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 77358 | 0.67 | 0.746339 |
Target: 5'- -uGGcCCUGGaGGCGCGGgGG--GCCa -3' miRNA: 3'- cuCCuGGACUaCCGCGCCgCUagCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 135259 | 0.67 | 0.746339 |
Target: 5'- -cGGGCCUGGaaaGGCuggacgcgcugGUGGCGGcCGCCc -3' miRNA: 3'- cuCCUGGACUa--CCG-----------CGCCGCUaGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 31344 | 0.67 | 0.746339 |
Target: 5'- gGGGGGCgCgcgcaGGCGCGGCGGgugggcgaagaCGCCg -3' miRNA: 3'- -CUCCUG-Gacua-CCGCGCCGCUa----------GCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 106700 | 0.67 | 0.745395 |
Target: 5'- -cGGGCCUaccGAcGGCcgcGCGGCGucccguccuagccAUCGCCa -3' miRNA: 3'- cuCCUGGA---CUaCCG---CGCCGC-------------UAGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 31267 | 0.67 | 0.736855 |
Target: 5'- uGGGAUCUGGgucugGGgGCGGCcc-UGCCg -3' miRNA: 3'- cUCCUGGACUa----CCgCGCCGcuaGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 116129 | 0.67 | 0.736855 |
Target: 5'- cGGGACCUGGUGGCccaCGuCGAg-GCCc -3' miRNA: 3'- cUCCUGGACUACCGc--GCcGCUagCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 15495 | 0.67 | 0.736855 |
Target: 5'- uGGGGGCUggugUGGUGGgG-GGCGuuuUCGCUg -3' miRNA: 3'- -CUCCUGG----ACUACCgCgCCGCu--AGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 73257 | 0.67 | 0.736855 |
Target: 5'- cGGGGACCUGGaGGCccaagaugcCGGCGGUaGCa -3' miRNA: 3'- -CUCCUGGACUaCCGc--------GCCGCUAgCGg -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 38986 | 0.67 | 0.736855 |
Target: 5'- aGGGuCCUGggGGCggaGCGGCaGAUUGUg -3' miRNA: 3'- cUCCuGGACuaCCG---CGCCG-CUAGCGg -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 78381 | 0.67 | 0.736855 |
Target: 5'- cGAGGACgcgCUGGUcgcGuGCGCGGCGG-CGUUg -3' miRNA: 3'- -CUCCUG---GACUA---C-CGCGCCGCUaGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 153692 | 0.67 | 0.736855 |
Target: 5'- cGGGGGCCgccGccGGCGCaGGCucagGcgCGCCa -3' miRNA: 3'- -CUCCUGGa--CuaCCGCG-CCG----CuaGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 9132 | 0.67 | 0.736855 |
Target: 5'- cGAGGuggUCUGcggcacgcgGGCGCGGCGccgcccgCGCCg -3' miRNA: 3'- -CUCCu--GGACua-------CCGCGCCGCua-----GCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 9779 | 0.67 | 0.731123 |
Target: 5'- -cGGugCUGAUGGUcauGUGGCcccaggcguggauauGAUCGUCc -3' miRNA: 3'- cuCCugGACUACCG---CGCCG---------------CUAGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 122737 | 0.67 | 0.727285 |
Target: 5'- gGAGaACCUGAUGcGCGCcucgaGGgGAcCGCCc -3' miRNA: 3'- -CUCcUGGACUAC-CGCG-----CCgCUaGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 12606 | 0.67 | 0.727285 |
Target: 5'- uGGGGGCCaucUGaGCGCGGCGG-CGUa -3' miRNA: 3'- -CUCCUGGacuAC-CGCGCCGCUaGCGg -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 97284 | 0.67 | 0.726323 |
Target: 5'- gGGGGccACCUGgcGGCGCuggacauGGUGGaCGCCc -3' miRNA: 3'- -CUCC--UGGACuaCCGCG-------CCGCUaGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 126041 | 0.67 | 0.717637 |
Target: 5'- cGAGcGCCUGGacGCgGCGGaCGAUCGUCu -3' miRNA: 3'- -CUCcUGGACUacCG-CGCC-GCUAGCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 31983 | 0.67 | 0.717637 |
Target: 5'- uGGGGGCCaaGA-GG-GCGGCGccgCGCCg -3' miRNA: 3'- -CUCCUGGa-CUaCCgCGCCGCua-GCGG- -5' |
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5138 | 3' | -59.2 | NC_001798.1 | + | 70927 | 0.67 | 0.707919 |
Target: 5'- uGAcGACCcccGAUcggGGCGCGGUGGUccCGCCg -3' miRNA: 3'- -CUcCUGGa--CUA---CCGCGCCGCUA--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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