miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 12606 0.67 0.727285
Target:  5'- uGGGGGCCaucUGaGCGCGGCGG-CGUa -3'
miRNA:   3'- -CUCCUGGacuAC-CGCGCCGCUaGCGg -5'
5138 3' -59.2 NC_001798.1 + 122737 0.67 0.727285
Target:  5'- gGAGaACCUGAUGcGCGCcucgaGGgGAcCGCCc -3'
miRNA:   3'- -CUCcUGGACUAC-CGCG-----CCgCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 97284 0.67 0.726323
Target:  5'- gGGGGccACCUGgcGGCGCuggacauGGUGGaCGCCc -3'
miRNA:   3'- -CUCC--UGGACuaCCGCG-------CCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 126041 0.67 0.717637
Target:  5'- cGAGcGCCUGGacGCgGCGGaCGAUCGUCu -3'
miRNA:   3'- -CUCcUGGACUacCG-CGCC-GCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 31983 0.67 0.717637
Target:  5'- uGGGGGCCaaGA-GG-GCGGCGccgCGCCg -3'
miRNA:   3'- -CUCCUGGa-CUaCCgCGCCGCua-GCGG- -5'
5138 3' -59.2 NC_001798.1 + 151614 0.67 0.707919
Target:  5'- cGGGGGCCgggccGggGGCGUGGCcg-CGUCc -3'
miRNA:   3'- -CUCCUGGa----CuaCCGCGCCGcuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 70927 0.67 0.707919
Target:  5'- uGAcGACCcccGAUcggGGCGCGGUGGUccCGCCg -3'
miRNA:   3'- -CUcCUGGa--CUA---CCGCGCCGCUA--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 38986 0.67 0.736855
Target:  5'- aGGGuCCUGggGGCggaGCGGCaGAUUGUg -3'
miRNA:   3'- cUCCuGGACuaCCG---CGCCG-CUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 78381 0.67 0.736855
Target:  5'- cGAGGACgcgCUGGUcgcGuGCGCGGCGG-CGUUg -3'
miRNA:   3'- -CUCCUG---GACUA---C-CGCGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 97445 0.67 0.755728
Target:  5'- gGAGGcgcugcgccGCgUGcUGGCGCGGCuGGggGCCg -3'
miRNA:   3'- -CUCC---------UGgACuACCGCGCCG-CUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 68771 0.67 0.755728
Target:  5'- cGGGGCCUGcccggGUGGC-CGGUGuguGUgGCCu -3'
miRNA:   3'- cUCCUGGAC-----UACCGcGCCGC---UAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 78609 0.67 0.750106
Target:  5'- cGAGGGCCUGGccaaccucaagaccaUGcUGaaGGUGGUCGCCg -3'
miRNA:   3'- -CUCCUGGACU---------------ACcGCg-CCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 31344 0.67 0.746339
Target:  5'- gGGGGGCgCgcgcaGGCGCGGCGGgugggcgaagaCGCCg -3'
miRNA:   3'- -CUCCUG-Gacua-CCGCGCCGCUa----------GCGG- -5'
5138 3' -59.2 NC_001798.1 + 135259 0.67 0.746339
Target:  5'- -cGGGCCUGGaaaGGCuggacgcgcugGUGGCGGcCGCCc -3'
miRNA:   3'- cuCCUGGACUa--CCG-----------CGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 77358 0.67 0.746339
Target:  5'- -uGGcCCUGGaGGCGCGGgGG--GCCa -3'
miRNA:   3'- cuCCuGGACUaCCGCGCCgCUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 37577 0.67 0.746339
Target:  5'- -cGGuuuuuggGGUGGuCGCGGUGGUCGUCg -3'
miRNA:   3'- cuCCugga---CUACC-GCGCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 23569 0.67 0.746339
Target:  5'- cGAGGGCCccg-GGgGCGGCGccccgGCCg -3'
miRNA:   3'- -CUCCUGGacuaCCgCGCCGCuag--CGG- -5'
5138 3' -59.2 NC_001798.1 + 106700 0.67 0.745395
Target:  5'- -cGGGCCUaccGAcGGCcgcGCGGCGucccguccuagccAUCGCCa -3'
miRNA:   3'- cuCCUGGA---CUaCCG---CGCCGC-------------UAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 9132 0.67 0.736855
Target:  5'- cGAGGuggUCUGcggcacgcgGGCGCGGCGccgcccgCGCCg -3'
miRNA:   3'- -CUCCu--GGACua-------CCGCGCCGCua-----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 153692 0.67 0.736855
Target:  5'- cGGGGGCCgccGccGGCGCaGGCucagGcgCGCCa -3'
miRNA:   3'- -CUCCUGGa--CuaCCGCG-CCG----CuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.