miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 72907 0.7 0.576
Target:  5'- aAGGGCCUGcAgacggagcgcgcgcUGGuCGUGGCGcgcuUCGCCa -3'
miRNA:   3'- cUCCUGGAC-U--------------ACC-GCGCCGCu---AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 93147 0.7 0.578962
Target:  5'- --uGGCCucggUGAUGGCG-GGCGA-CGCCg -3'
miRNA:   3'- cucCUGG----ACUACCGCgCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 70295 0.7 0.578962
Target:  5'- -cGGcguuUCUGuugucgGGCGCGGCGGUCgGCCc -3'
miRNA:   3'- cuCCu---GGACua----CCGCGCCGCUAG-CGG- -5'
5138 3' -59.2 NC_001798.1 + 36269 0.7 0.578962
Target:  5'- -uGGACCccggGGUGG-GCGGCGGgggggggUGCCg -3'
miRNA:   3'- cuCCUGGa---CUACCgCGCCGCUa------GCGG- -5'
5138 3' -59.2 NC_001798.1 + 39415 0.69 0.598783
Target:  5'- cGGGACCgg--GGCGCGGCcGUcCGCg -3'
miRNA:   3'- cUCCUGGacuaCCGCGCCGcUA-GCGg -5'
5138 3' -59.2 NC_001798.1 + 132149 0.69 0.60674
Target:  5'- cGGGGGCCgGcgGGCGgGGCGccccccccggaCGCCc -3'
miRNA:   3'- -CUCCUGGaCuaCCGCgCCGCua---------GCGG- -5'
5138 3' -59.2 NC_001798.1 + 4051 0.69 0.60674
Target:  5'- -cGGGCCcGgcGGCGCuccaggcggcccGCGGUCGCCg -3'
miRNA:   3'- cuCCUGGaCuaCCGCGc-----------CGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 91814 0.69 0.608731
Target:  5'- uGGGGACCgug-GGCGgGGCccGA-CGCCg -3'
miRNA:   3'- -CUCCUGGacuaCCGCgCCG--CUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 152994 0.69 0.608731
Target:  5'- cGGGAa--GccGGCGCggGGCGGUCGCCg -3'
miRNA:   3'- cUCCUggaCuaCCGCG--CCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 80673 0.69 0.608731
Target:  5'- -uGGACCUGGuucUGGcCGCGGUGcuccucggcgCGCCc -3'
miRNA:   3'- cuCCUGGACU---ACC-GCGCCGCua--------GCGG- -5'
5138 3' -59.2 NC_001798.1 + 102187 0.69 0.618697
Target:  5'- uGGGGCCcgGAagccUGGCGCG-CGGcgCGCCg -3'
miRNA:   3'- cUCCUGGa-CU----ACCGCGCcGCUa-GCGG- -5'
5138 3' -59.2 NC_001798.1 + 102384 0.69 0.618697
Target:  5'- ---cGCCUGgcGGUcgGCGGCGAUgGCCc -3'
miRNA:   3'- cuccUGGACuaCCG--CGCCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 76367 0.69 0.625678
Target:  5'- cGAGGACCUGgcGGCcUGGCucucgguccugaccGA-CGCCg -3'
miRNA:   3'- -CUCCUGGACuaCCGcGCCG--------------CUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 25545 0.69 0.628671
Target:  5'- gGAGGACgUGc--GCGUGGUGAuccucuacUCGCCg -3'
miRNA:   3'- -CUCCUGgACuacCGCGCCGCU--------AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 63734 0.69 0.638649
Target:  5'- -cGGGCCacauaGGCGCGGCG--CGCCu -3'
miRNA:   3'- cuCCUGGacua-CCGCGCCGCuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 4686 0.69 0.638649
Target:  5'- cAGGGCCaGcUGcCGCGGCGAgacgaCGCCg -3'
miRNA:   3'- cUCCUGGaCuACcGCGCCGCUa----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 138165 0.69 0.638649
Target:  5'- cGGGuCCUGggGGCGCGacccGCGGccggUGCCg -3'
miRNA:   3'- cUCCuGGACuaCCGCGC----CGCUa---GCGG- -5'
5138 3' -59.2 NC_001798.1 + 39660 0.68 0.648621
Target:  5'- cGGGGCCguaucGAccccGGCcccgGCGGCGAccUCGCCg -3'
miRNA:   3'- cUCCUGGa----CUa---CCG----CGCCGCU--AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 130769 0.68 0.648621
Target:  5'- -cGGACCgacgauacGAUGGUGCGuCGG-CGCCg -3'
miRNA:   3'- cuCCUGGa-------CUACCGCGCcGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 148398 0.68 0.648621
Target:  5'- -cGGGCaggugUGcgGGCGgGGUGggCGCCg -3'
miRNA:   3'- cuCCUGg----ACuaCCGCgCCGCuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.