miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 57401 0.71 0.473705
Target:  5'- -cGGGCCaGcgGGuCGUGGCGGUUGCa -3'
miRNA:   3'- cuCCUGGaCuaCC-GCGCCGCUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 107410 0.71 0.482911
Target:  5'- gGAGGACUgggGccGGCuGaCGGgGGUCGCCg -3'
miRNA:   3'- -CUCCUGGa--CuaCCG-C-GCCgCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 58696 0.71 0.482911
Target:  5'- cAGGGCCgcGgcGGCGCGGgGGUCGauCCa -3'
miRNA:   3'- cUCCUGGa-CuaCCGCGCCgCUAGC--GG- -5'
5138 3' -59.2 NC_001798.1 + 13891 0.71 0.482911
Target:  5'- -cGGAguaUGGUGGUGCGGUGGgucCGCCa -3'
miRNA:   3'- cuCCUgg-ACUACCGCGCCGCUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 24188 0.71 0.492203
Target:  5'- uGGGGCCUGgcGcaCGUGGCGGcCGCCg -3'
miRNA:   3'- cUCCUGGACuaCc-GCGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 78557 0.71 0.511028
Target:  5'- -cGGGCCUGcgGGaggcgcuggcCGCGcGCGAgCGCCg -3'
miRNA:   3'- cuCCUGGACuaCC----------GCGC-CGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 45334 0.71 0.520552
Target:  5'- aGAGcGACgUGGUcauggaGGaCGUGGCGAUCGCg -3'
miRNA:   3'- -CUC-CUGgACUA------CC-GCGCCGCUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 25587 0.7 0.530145
Target:  5'- cGAGGACCUGGccGCG-GGCcg-CGCCg -3'
miRNA:   3'- -CUCCUGGACUacCGCgCCGcuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 60209 0.7 0.530145
Target:  5'- -uGGACCUGGgcgcUGGUGCuGGaCGAcgCGCCc -3'
miRNA:   3'- cuCCUGGACU----ACCGCG-CC-GCUa-GCGG- -5'
5138 3' -59.2 NC_001798.1 + 97536 0.7 0.530145
Target:  5'- gGGGGGCg-GAggcgUGGCGCGGgGA-CGCCc -3'
miRNA:   3'- -CUCCUGgaCU----ACCGCGCCgCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 20319 0.7 0.530145
Target:  5'- uGAGGuagcagucucgcACCaGGUGGCGCaGGCGGUUGgCg -3'
miRNA:   3'- -CUCC------------UGGaCUACCGCG-CCGCUAGCgG- -5'
5138 3' -59.2 NC_001798.1 + 15363 0.7 0.530145
Target:  5'- uGAGGggggaaucgGCCgug-GGCGCGGCGGaggCGCCc -3'
miRNA:   3'- -CUCC---------UGGacuaCCGCGCCGCUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 23667 0.7 0.539801
Target:  5'- -cGGGCCc----GCGCGGCGGUgGCCg -3'
miRNA:   3'- cuCCUGGacuacCGCGCCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 26202 0.7 0.54757
Target:  5'- -cGGGCCgccgccucgGGCGCgGGCGA-CGCCa -3'
miRNA:   3'- cuCCUGGacua-----CCGCG-CCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 137169 0.7 0.548543
Target:  5'- cAGGACgCUGGUcgcgguaaaccgcGGC-UGGCGAUCGCUg -3'
miRNA:   3'- cUCCUG-GACUA-------------CCGcGCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 150045 0.7 0.549517
Target:  5'- cGGGGCCc---GGCGCGGCGc-CGCCc -3'
miRNA:   3'- cUCCUGGacuaCCGCGCCGCuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 128075 0.7 0.559286
Target:  5'- -cGGACCccgacccgaugUGGUcGGCGuCGGCGAUCcCCa -3'
miRNA:   3'- cuCCUGG-----------ACUA-CCGC-GCCGCUAGcGG- -5'
5138 3' -59.2 NC_001798.1 + 152185 0.7 0.559286
Target:  5'- gGGGGGCCUGAgacC-CGGgGGUCGCCc -3'
miRNA:   3'- -CUCCUGGACUaccGcGCCgCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 59815 0.7 0.559286
Target:  5'- cGAGGccuucuucuUCUGG-GGCGCcGCGGUCGCCc -3'
miRNA:   3'- -CUCCu--------GGACUaCCGCGcCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 2473 0.7 0.559286
Target:  5'- cGGGGCCcucgGcgGGC-CGGCGGgucagCGCCg -3'
miRNA:   3'- cUCCUGGa---CuaCCGcGCCGCUa----GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.