miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 15724 0.66 0.800946
Target:  5'- uGGGucgaCUGAgGGUGCcauGGCGGUgGCCg -3'
miRNA:   3'- cUCCug--GACUaCCGCG---CCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 17869 0.66 0.809587
Target:  5'- aGGGGGCUUGcaccCGCGGCuGAUgGCCc -3'
miRNA:   3'- -CUCCUGGACuaccGCGCCG-CUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 20319 0.7 0.530145
Target:  5'- uGAGGuagcagucucgcACCaGGUGGCGCaGGCGGUUGgCg -3'
miRNA:   3'- -CUCC------------UGGaCUACCGCG-CCGCUAGCgG- -5'
5138 3' -59.2 NC_001798.1 + 20462 0.66 0.795691
Target:  5'- -uGGGCCUGGcgagcagagcgccggUGcGCGUGcGCGAUCcCCg -3'
miRNA:   3'- cuCCUGGACU---------------AC-CGCGC-CGCUAGcGG- -5'
5138 3' -59.2 NC_001798.1 + 22388 0.66 0.789497
Target:  5'- gGGGGcggaaccccggcgaGCCgg--GGCGCGGCGG-CGUCg -3'
miRNA:   3'- -CUCC--------------UGGacuaCCGCGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 22475 0.66 0.800946
Target:  5'- cGAGGACUauAUcagccaGGCGacggGGCGAUCGUCc -3'
miRNA:   3'- -CUCCUGGacUA------CCGCg---CCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 23569 0.67 0.746339
Target:  5'- cGAGGGCCccg-GGgGCGGCGccccgGCCg -3'
miRNA:   3'- -CUCCUGGacuaCCgCGCCGCuag--CGG- -5'
5138 3' -59.2 NC_001798.1 + 23667 0.7 0.539801
Target:  5'- -cGGGCCc----GCGCGGCGGUgGCCg -3'
miRNA:   3'- cuCCUGGacuacCGCGCCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 24086 0.66 0.800946
Target:  5'- -cGGAUCUcg-GGCGCGGCG--CGCa -3'
miRNA:   3'- cuCCUGGAcuaCCGCGCCGCuaGCGg -5'
5138 3' -59.2 NC_001798.1 + 24188 0.71 0.492203
Target:  5'- uGGGGCCUGgcGcaCGUGGCGGcCGCCg -3'
miRNA:   3'- cUCCUGGACuaCc-GCGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 24625 0.66 0.765012
Target:  5'- cGGGAuCCUGGaGGCGCuGGCGGagGgCu -3'
miRNA:   3'- cUCCU-GGACUaCCGCG-CCGCUagCgG- -5'
5138 3' -59.2 NC_001798.1 + 24717 0.74 0.340259
Target:  5'- cGGGGCCcGcgGGCGCGGCcgcccCGCCg -3'
miRNA:   3'- cUCCUGGaCuaCCGCGCCGcua--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 24826 0.74 0.34776
Target:  5'- cGGGGACCUGcgcGUGGCcgGCGGCagcGAggcCGCCg -3'
miRNA:   3'- -CUCCUGGAC---UACCG--CGCCG---CUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 25545 0.69 0.628671
Target:  5'- gGAGGACgUGc--GCGUGGUGAuccucuacUCGCCg -3'
miRNA:   3'- -CUCCUGgACuacCGCGCCGCU--------AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 25587 0.7 0.530145
Target:  5'- cGAGGACCUGGccGCG-GGCcg-CGCCg -3'
miRNA:   3'- -CUCCUGGACUacCGCgCCGcuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 25817 0.66 0.809587
Target:  5'- uGGGGCUgcugGccGGCGCcuGCGAcCGCCg -3'
miRNA:   3'- cUCCUGGa---CuaCCGCGc-CGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 26202 0.7 0.54757
Target:  5'- -cGGGCCgccgccucgGGCGCgGGCGA-CGCCa -3'
miRNA:   3'- cuCCUGGacua-----CCGCG-CCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 26506 0.66 0.774185
Target:  5'- cGGGGACggUGcUGGcCGCGGCGggCGgCg -3'
miRNA:   3'- -CUCCUGg-ACuACC-GCGCCGCuaGCgG- -5'
5138 3' -59.2 NC_001798.1 + 30183 0.67 0.707919
Target:  5'- gGGGGACac---GGCGCGGgGGUccCGCCu -3'
miRNA:   3'- -CUCCUGgacuaCCGCGCCgCUA--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 30409 0.8 0.156282
Target:  5'- -cGGGCCUGAUGGaCGCGGCca-CGCCc -3'
miRNA:   3'- cuCCUGGACUACC-GCGCCGcuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.