miRNA display CGI


Results 21 - 40 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 130769 0.68 0.648621
Target:  5'- -cGGACCgacgauacGAUGGUGCGuCGG-CGCCg -3'
miRNA:   3'- cuCCUGGa-------CUACCGCGCcGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 129054 0.66 0.79216
Target:  5'- -cGGGCgCUGGUGGaguuaaauaGCGGCG-UUGUCu -3'
miRNA:   3'- cuCCUG-GACUACCg--------CGCCGCuAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 128867 1.12 0.000982
Target:  5'- cGAGGACCUGAUGGCGCGGCGAUCGCCg -3'
miRNA:   3'- -CUCCUGGACUACCGCGCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 128075 0.7 0.559286
Target:  5'- -cGGACCccgacccgaugUGGUcGGCGuCGGCGAUCcCCa -3'
miRNA:   3'- cuCCUGG-----------ACUA-CCGC-GCCGCUAGcGG- -5'
5138 3' -59.2 NC_001798.1 + 126041 0.67 0.717637
Target:  5'- cGAGcGCCUGGacGCgGCGGaCGAUCGUCu -3'
miRNA:   3'- -CUCcUGGACUacCG-CGCC-GCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 125471 0.72 0.42907
Target:  5'- cGGGACCacggucUGGUGGCGCuugGGCG-UCGCg -3'
miRNA:   3'- cUCCUGG------ACUACCGCG---CCGCuAGCGg -5'
5138 3' -59.2 NC_001798.1 + 125320 0.68 0.668521
Target:  5'- cGGGGGCCagGAacuccagcuUGGC-CGuGUGGUCGCCc -3'
miRNA:   3'- -CUCCUGGa-CU---------ACCGcGC-CGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 124876 0.68 0.678433
Target:  5'- uGGGGACUagaaacacGGUGGCGCgcuGGCGGaagUGCCg -3'
miRNA:   3'- -CUCCUGGa-------CUACCGCG---CCGCUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 123945 0.77 0.241864
Target:  5'- cGGGGGCCUGGUGGCaccucccCGGCGGcCGCa -3'
miRNA:   3'- -CUCCUGGACUACCGc------GCCGCUaGCGg -5'
5138 3' -59.2 NC_001798.1 + 122737 0.67 0.727285
Target:  5'- gGAGaACCUGAUGcGCGCcucgaGGgGAcCGCCc -3'
miRNA:   3'- -CUCcUGGACUAC-CGCG-----CCgCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 121244 0.68 0.648621
Target:  5'- cGAGuGCCUGgcGGCgGCGGgGGUC-CCg -3'
miRNA:   3'- -CUCcUGGACuaCCG-CGCCgCUAGcGG- -5'
5138 3' -59.2 NC_001798.1 + 116129 0.67 0.736855
Target:  5'- cGGGACCUGGUGGCccaCGuCGAg-GCCc -3'
miRNA:   3'- cUCCUGGACUACCGc--GCcGCUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 115153 0.66 0.783237
Target:  5'- -cGGAUCUGGUGGCcauaGGCGAcagGCUg -3'
miRNA:   3'- cuCCUGGACUACCGcg--CCGCUag-CGG- -5'
5138 3' -59.2 NC_001798.1 + 113642 0.66 0.783237
Target:  5'- -cGGcGCCgccaugugGGUGGCgGCGGCGGacugcuUUGCCg -3'
miRNA:   3'- cuCC-UGGa-------CUACCG-CGCCGCU------AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 113343 0.68 0.668521
Target:  5'- -uGGACCgGAcGG-GCGGUGG-CGCCg -3'
miRNA:   3'- cuCCUGGaCUaCCgCGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 107410 0.71 0.482911
Target:  5'- gGAGGACUgggGccGGCuGaCGGgGGUCGCCg -3'
miRNA:   3'- -CUCCUGGa--CuaCCG-C-GCCgCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 106700 0.67 0.745395
Target:  5'- -cGGGCCUaccGAcGGCcgcGCGGCGucccguccuagccAUCGCCa -3'
miRNA:   3'- cuCCUGGA---CUaCCG---CGCCGC-------------UAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 106071 0.72 0.446632
Target:  5'- gGGGGGCCuuugcggucUGgcGGuCGCGGCGAcccggCGCCg -3'
miRNA:   3'- -CUCCUGG---------ACuaCC-GCGCCGCUa----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 104437 0.78 0.214769
Target:  5'- cAGGGCCguaAUGGUGuUGGCGGUCGCCc -3'
miRNA:   3'- cUCCUGGac-UACCGC-GCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 103076 0.66 0.800946
Target:  5'- cGGGuCCaGGUGGCGaaacgGaGCGAUgGCCg -3'
miRNA:   3'- cUCCuGGaCUACCGCg----C-CGCUAgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.