miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 154092 0.68 0.69814
Target:  5'- gGAGcGCCgg--GGCGCGGCcggCGCCg -3'
miRNA:   3'- -CUCcUGGacuaCCGCGCCGcuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 153692 0.67 0.736855
Target:  5'- cGGGGGCCgccGccGGCGCaGGCucagGcgCGCCa -3'
miRNA:   3'- -CUCCUGGa--CuaCCGCG-CCG----CuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 153077 0.66 0.79216
Target:  5'- -cGGGCg-GAgcGGCGgGGCGG-CGCCg -3'
miRNA:   3'- cuCCUGgaCUa-CCGCgCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 152994 0.69 0.608731
Target:  5'- cGGGAa--GccGGCGCggGGCGGUCGCCg -3'
miRNA:   3'- cUCCUggaCuaCCGCG--CCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 152185 0.7 0.559286
Target:  5'- gGGGGGCCUGAgacC-CGGgGGUCGCCc -3'
miRNA:   3'- -CUCCUGGACUaccGcGCCgCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 151614 0.67 0.707919
Target:  5'- cGGGGGCCgggccGggGGCGUGGCcg-CGUCc -3'
miRNA:   3'- -CUCCUGGa----CuaCCGCGCCGcuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 150836 0.66 0.809587
Target:  5'- cGGGGcGCCaGggGGCGcCGGUcgGGUCGCg -3'
miRNA:   3'- -CUCC-UGGaCuaCCGC-GCCG--CUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 150045 0.7 0.549517
Target:  5'- cGGGGCCc---GGCGCGGCGc-CGCCc -3'
miRNA:   3'- cUCCUGGacuaCCGCGCCGCuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 148398 0.68 0.648621
Target:  5'- -cGGGCaggugUGcgGGCGgGGUGggCGCCg -3'
miRNA:   3'- cuCCUGg----ACuaCCGCgCCGCuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 146114 0.67 0.755728
Target:  5'- aGGGGGggUGGUGGCgGCGGCGGUgGa- -3'
miRNA:   3'- -CUCCUggACUACCG-CGCCGCUAgCgg -5'
5138 3' -59.2 NC_001798.1 + 140205 0.78 0.199792
Target:  5'- -cGGugCUGGUGuGCGUGG-GGUCGCCg -3'
miRNA:   3'- cuCCugGACUAC-CGCGCCgCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 139688 0.66 0.79216
Target:  5'- cGAGGuCCUGGacuGCGUGGUcacGggCGCCa -3'
miRNA:   3'- -CUCCuGGACUac-CGCGCCG---CuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 138527 0.68 0.665542
Target:  5'- cGGGGCacagccgCUGAacgGGCGaaucgaagaccaGGCGGUCGCCg -3'
miRNA:   3'- cUCCUG-------GACUa--CCGCg-----------CCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 138165 0.69 0.638649
Target:  5'- cGGGuCCUGggGGCGCGacccGCGGccggUGCCg -3'
miRNA:   3'- cUCCuGGACuaCCGCGC----CGCUa---GCGG- -5'
5138 3' -59.2 NC_001798.1 + 137671 0.68 0.688309
Target:  5'- cGGGGCCacGAaGGa--GGCGAUCGCCc -3'
miRNA:   3'- cUCCUGGa-CUaCCgcgCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 137169 0.7 0.548543
Target:  5'- cAGGACgCUGGUcgcgguaaaccgcGGC-UGGCGAUCGCUg -3'
miRNA:   3'- cUCCUG-GACUA-------------CCGcGCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 135326 0.68 0.668521
Target:  5'- gGAGcGCCUGGUgccGGaCGCGuGCGA-CGCCu -3'
miRNA:   3'- -CUCcUGGACUA---CC-GCGC-CGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 135259 0.67 0.746339
Target:  5'- -cGGGCCUGGaaaGGCuggacgcgcugGUGGCGGcCGCCc -3'
miRNA:   3'- cuCCUGGACUa--CCG-----------CGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 134986 0.75 0.291063
Target:  5'- uGGGGGCCUGGcc-CGCGGUGggCGCCa -3'
miRNA:   3'- -CUCCUGGACUaccGCGCCGCuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 132149 0.69 0.60674
Target:  5'- cGGGGGCCgGcgGGCGgGGCGccccccccggaCGCCc -3'
miRNA:   3'- -CUCCUGGaCuaCCGCgCCGCua---------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.