miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 128867 1.12 0.000982
Target:  5'- cGAGGACCUGAUGGCGCGGCGAUCGCCg -3'
miRNA:   3'- -CUCCUGGACUACCGCGCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 30409 0.8 0.156282
Target:  5'- -cGGGCCUGAUGGaCGCGGCca-CGCCc -3'
miRNA:   3'- cuCCUGGACUACC-GCGCCGcuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 140205 0.78 0.199792
Target:  5'- -cGGugCUGGUGuGCGUGG-GGUCGCCg -3'
miRNA:   3'- cuCCugGACUAC-CGCGCCgCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 98566 0.78 0.214769
Target:  5'- uGGGGGCgCUGGUGGcCGCGGUGG-CGUCg -3'
miRNA:   3'- -CUCCUG-GACUACC-GCGCCGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 104437 0.78 0.214769
Target:  5'- cAGGGCCguaAUGGUGuUGGCGGUCGCCc -3'
miRNA:   3'- cUCCUGGac-UACCGC-GCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 123945 0.77 0.241864
Target:  5'- cGGGGGCCUGGUGGCaccucccCGGCGGcCGCa -3'
miRNA:   3'- -CUCCUGGACUACCGc------GCCGCUaGCGg -5'
5138 3' -59.2 NC_001798.1 + 79859 0.76 0.265542
Target:  5'- uGGGGcGCCUcGAUGGaCGCGGCGGccgagcuguacgUCGCCc -3'
miRNA:   3'- -CUCC-UGGA-CUACC-GCGCCGCU------------AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 134986 0.75 0.291063
Target:  5'- uGGGGGCCUGGcc-CGCGGUGggCGCCa -3'
miRNA:   3'- -CUCCUGGACUaccGCGCCGCuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 71116 0.75 0.310741
Target:  5'- cGGGGACgCUGAUGGCGCGcgugcggacggacGCGGcCGUCu -3'
miRNA:   3'- -CUCCUG-GACUACCGCGC-------------CGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 24717 0.74 0.340259
Target:  5'- cGGGGCCcGcgGGCGCGGCcgcccCGCCg -3'
miRNA:   3'- cUCCUGGaCuaCCGCGCCGcua--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 95378 0.74 0.340259
Target:  5'- gGAGGGC-----GGgGCGGCGGUCGCCa -3'
miRNA:   3'- -CUCCUGgacuaCCgCGCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 24826 0.74 0.34776
Target:  5'- cGGGGACCUGcgcGUGGCcgGCGGCagcGAggcCGCCg -3'
miRNA:   3'- -CUCCUGGAC---UACCG--CGCCG---CUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 100746 0.74 0.34776
Target:  5'- gGGGGACUUGG-GGCGCG-CGGUCGgCa -3'
miRNA:   3'- -CUCCUGGACUaCCGCGCcGCUAGCgG- -5'
5138 3' -59.2 NC_001798.1 + 79250 0.74 0.355379
Target:  5'- gGGGGGCCUGcUGGCggaguucgacGCGGCGGcCGCg -3'
miRNA:   3'- -CUCCUGGACuACCG----------CGCCGCUaGCGg -5'
5138 3' -59.2 NC_001798.1 + 88182 0.73 0.403509
Target:  5'- cGGGACCUGc--GCGCGGCGG--GCCa -3'
miRNA:   3'- cUCCUGGACuacCGCGCCGCUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 125471 0.72 0.42907
Target:  5'- cGGGACCacggucUGGUGGCGCuugGGCG-UCGCg -3'
miRNA:   3'- cUCCUGG------ACUACCGCG---CCGCuAGCGg -5'
5138 3' -59.2 NC_001798.1 + 74397 0.72 0.446632
Target:  5'- cGGGGGCC--GUGGCGcCGGCGGaccugacCGCCg -3'
miRNA:   3'- -CUCCUGGacUACCGC-GCCGCUa------GCGG- -5'
5138 3' -59.2 NC_001798.1 + 106071 0.72 0.446632
Target:  5'- gGGGGGCCuuugcggucUGgcGGuCGCGGCGAcccggCGCCg -3'
miRNA:   3'- -CUCCUGG---------ACuaCC-GCGCCGCUa----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 83331 0.72 0.460966
Target:  5'- cGAGGGCCgcagccauucGGcCGCGGCG-UCGCCc -3'
miRNA:   3'- -CUCCUGGacua------CC-GCGCCGCuAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 47862 0.72 0.464587
Target:  5'- cGGGGGCCccgugGGCGcCGGCGggCGCUc -3'
miRNA:   3'- -CUCCUGGacua-CCGC-GCCGCuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.