miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 1530 0.66 0.809587
Target:  5'- cAGcGCCggGAgcacGGCGCGGCGGuacUCGCg -3'
miRNA:   3'- cUCcUGGa-CUa---CCGCGCCGCU---AGCGg -5'
5138 3' -59.2 NC_001798.1 + 2222 0.66 0.809587
Target:  5'- -cGGGCCcGAggcgcgcagcgGGCcgaagGCGGCGGgcgCGCCg -3'
miRNA:   3'- cuCCUGGaCUa----------CCG-----CGCCGCUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 2473 0.7 0.559286
Target:  5'- cGGGGCCcucgGcgGGC-CGGCGGgucagCGCCg -3'
miRNA:   3'- cUCCUGGa---CuaCCGcGCCGCUa----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 3000 0.68 0.668521
Target:  5'- -cGGGCCccgggcgcGggGGCGCGGCGG--GCCg -3'
miRNA:   3'- cuCCUGGa-------CuaCCGCGCCGCUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 3201 0.66 0.765012
Target:  5'- --cGGCCggcgcgGAggcgGGCGCGGCGcucaggCGCCc -3'
miRNA:   3'- cucCUGGa-----CUa---CCGCGCCGCua----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 4051 0.69 0.60674
Target:  5'- -cGGGCCcGgcGGCGCuccaggcggcccGCGGUCGCCg -3'
miRNA:   3'- cuCCUGGaCuaCCGCGc-----------CGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 4411 0.66 0.800946
Target:  5'- cGGGGcGCC-GggGGuCGCGGCGAcaggcUgGCCa -3'
miRNA:   3'- -CUCC-UGGaCuaCC-GCGCCGCU-----AgCGG- -5'
5138 3' -59.2 NC_001798.1 + 4686 0.69 0.638649
Target:  5'- cAGGGCCaGcUGcCGCGGCGAgacgaCGCCg -3'
miRNA:   3'- cUCCUGGaCuACcGCGCCGCUa----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 6004 0.66 0.765012
Target:  5'- cGGaGACCggGAcGGCaGCGGCGGcaUCGCg -3'
miRNA:   3'- cUC-CUGGa-CUaCCG-CGCCGCU--AGCGg -5'
5138 3' -59.2 NC_001798.1 + 9132 0.67 0.736855
Target:  5'- cGAGGuggUCUGcggcacgcgGGCGCGGCGccgcccgCGCCg -3'
miRNA:   3'- -CUCCu--GGACua-------CCGCGCCGCua-----GCGG- -5'
5138 3' -59.2 NC_001798.1 + 9779 0.67 0.731123
Target:  5'- -cGGugCUGAUGGUcauGUGGCcccaggcguggauauGAUCGUCc -3'
miRNA:   3'- cuCCugGACUACCG---CGCCG---------------CUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 12258 0.68 0.669514
Target:  5'- uGGGGCCgcggacgaccaggccGGUGGCGCagacccacaGGCccagGAUCGCCa -3'
miRNA:   3'- cUCCUGGa--------------CUACCGCG---------CCG----CUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 12354 0.66 0.774185
Target:  5'- cGAGGuGgCUGugGGCGCGGUGGcuaaUCGUCg -3'
miRNA:   3'- -CUCC-UgGACuaCCGCGCCGCU----AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 12606 0.67 0.727285
Target:  5'- uGGGGGCCaucUGaGCGCGGCGG-CGUa -3'
miRNA:   3'- -CUCCUGGacuAC-CGCGCCGCUaGCGg -5'
5138 3' -59.2 NC_001798.1 + 13891 0.71 0.482911
Target:  5'- -cGGAguaUGGUGGUGCGGUGGgucCGCCa -3'
miRNA:   3'- cuCCUgg-ACUACCGCGCCGCUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 14320 0.66 0.809587
Target:  5'- gGGGGugCgUGGggaGGCGU-GCGGUCGCg -3'
miRNA:   3'- -CUCCugG-ACUa--CCGCGcCGCUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 15108 0.66 0.771445
Target:  5'- cGAGG-CC-GGUGGCGCugucgucguccucgGGgGGUuCGCCg -3'
miRNA:   3'- -CUCCuGGaCUACCGCG--------------CCgCUA-GCGG- -5'
5138 3' -59.2 NC_001798.1 + 15281 0.66 0.809587
Target:  5'- cGGGuuCCg---GGCGUGGCGGUgGUCg -3'
miRNA:   3'- cUCCu-GGacuaCCGCGCCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 15363 0.7 0.530145
Target:  5'- uGAGGggggaaucgGCCgug-GGCGCGGCGGaggCGCCc -3'
miRNA:   3'- -CUCC---------UGGacuaCCGCGCCGCUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 15495 0.67 0.736855
Target:  5'- uGGGGGCUggugUGGUGGgG-GGCGuuuUCGCUg -3'
miRNA:   3'- -CUCCUGG----ACUACCgCgCCGCu--AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.