miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 15281 0.66 0.809587
Target:  5'- cGGGuuCCg---GGCGUGGCGGUgGUCg -3'
miRNA:   3'- cUCCu-GGacuaCCGCGCCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 14320 0.66 0.809587
Target:  5'- gGGGGugCgUGGggaGGCGU-GCGGUCGCg -3'
miRNA:   3'- -CUCCugG-ACUa--CCGCGcCGCUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 2222 0.66 0.809587
Target:  5'- -cGGGCCcGAggcgcgcagcgGGCcgaagGCGGCGGgcgCGCCg -3'
miRNA:   3'- cuCCUGGaCUa----------CCG-----CGCCGCUa--GCGG- -5'
5138 3' -59.2 NC_001798.1 + 1530 0.66 0.809587
Target:  5'- cAGcGCCggGAgcacGGCGCGGCGGuacUCGCg -3'
miRNA:   3'- cUCcUGGa-CUa---CCGCGCCGCU---AGCGg -5'
5138 3' -59.2 NC_001798.1 + 97112 0.66 0.809587
Target:  5'- cGAGcugcgcuUCUGGcUGGCGUccGGCGAUCGCg -3'
miRNA:   3'- -CUCcu-----GGACU-ACCGCG--CCGCUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 57737 0.66 0.809587
Target:  5'- aAGGACCggugGGCGCgcccGGCGcagcgaggaggGUUGCCg -3'
miRNA:   3'- cUCCUGGacuaCCGCG----CCGC-----------UAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 17869 0.66 0.809587
Target:  5'- aGGGGGCUUGcaccCGCGGCuGAUgGCCc -3'
miRNA:   3'- -CUCCUGGACuaccGCGCCG-CUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 25817 0.66 0.809587
Target:  5'- uGGGGCUgcugGccGGCGCcuGCGAcCGCCg -3'
miRNA:   3'- cUCCUGGa---CuaCCGCGc-CGCUaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 103076 0.66 0.800946
Target:  5'- cGGGuCCaGGUGGCGaaacgGaGCGAUgGCCg -3'
miRNA:   3'- cUCCuGGaCUACCGCg----C-CGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 55756 0.66 0.800946
Target:  5'- gGGGGAUaagGGUGGC-CGGCGcgCugcaGCCg -3'
miRNA:   3'- -CUCCUGga-CUACCGcGCCGCuaG----CGG- -5'
5138 3' -59.2 NC_001798.1 + 24086 0.66 0.800946
Target:  5'- -cGGAUCUcg-GGCGCGGCG--CGCa -3'
miRNA:   3'- cuCCUGGAcuaCCGCGCCGCuaGCGg -5'
5138 3' -59.2 NC_001798.1 + 22475 0.66 0.800946
Target:  5'- cGAGGACUauAUcagccaGGCGacggGGCGAUCGUCc -3'
miRNA:   3'- -CUCCUGGacUA------CCGCg---CCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 4411 0.66 0.800946
Target:  5'- cGGGGcGCC-GggGGuCGCGGCGAcaggcUgGCCa -3'
miRNA:   3'- -CUCC-UGGaCuaCC-GCGCCGCU-----AgCGG- -5'
5138 3' -59.2 NC_001798.1 + 15724 0.66 0.800946
Target:  5'- uGGGucgaCUGAgGGUGCcauGGCGGUgGCCg -3'
miRNA:   3'- cUCCug--GACUaCCGCG---CCGCUAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 87756 0.66 0.79216
Target:  5'- -cGGcCCUGAgccGCGCGGCcacGUCGUCc -3'
miRNA:   3'- cuCCuGGACUac-CGCGCCGc--UAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 146114 0.67 0.755728
Target:  5'- aGGGGGggUGGUGGCgGCGGCGGUgGa- -3'
miRNA:   3'- -CUCCUggACUACCG-CGCCGCUAgCgg -5'
5138 3' -59.2 NC_001798.1 + 97445 0.67 0.755728
Target:  5'- gGAGGcgcugcgccGCgUGcUGGCGCGGCuGGggGCCg -3'
miRNA:   3'- -CUCC---------UGgACuACCGCGCCG-CUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 68771 0.67 0.755728
Target:  5'- cGGGGCCUGcccggGUGGC-CGGUGuguGUgGCCu -3'
miRNA:   3'- cUCCUGGAC-----UACCGcGCCGC---UAgCGG- -5'
5138 3' -59.2 NC_001798.1 + 78609 0.67 0.750106
Target:  5'- cGAGGGCCUGGccaaccucaagaccaUGcUGaaGGUGGUCGCCg -3'
miRNA:   3'- -CUCCUGGACU---------------ACcGCg-CCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 31344 0.67 0.746339
Target:  5'- gGGGGGCgCgcgcaGGCGCGGCGGgugggcgaagaCGCCg -3'
miRNA:   3'- -CUCCUG-Gacua-CCGCGCCGCUa----------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.