miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5138 3' -59.2 NC_001798.1 + 31267 0.67 0.736855
Target:  5'- uGGGAUCUGGgucugGGgGCGGCcc-UGCCg -3'
miRNA:   3'- cUCCUGGACUa----CCgCGCCGcuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 31344 0.67 0.746339
Target:  5'- gGGGGGCgCgcgcaGGCGCGGCGGgugggcgaagaCGCCg -3'
miRNA:   3'- -CUCCUG-Gacua-CCGCGCCGCUa----------GCGG- -5'
5138 3' -59.2 NC_001798.1 + 31983 0.67 0.717637
Target:  5'- uGGGGGCCaaGA-GG-GCGGCGccgCGCCg -3'
miRNA:   3'- -CUCCUGGa-CUaCCgCGCCGCua-GCGG- -5'
5138 3' -59.2 NC_001798.1 + 36269 0.7 0.578962
Target:  5'- -uGGACCccggGGUGG-GCGGCGGgggggggUGCCg -3'
miRNA:   3'- cuCCUGGa---CUACCgCGCCGCUa------GCGG- -5'
5138 3' -59.2 NC_001798.1 + 37577 0.67 0.746339
Target:  5'- -cGGuuuuuggGGUGGuCGCGGUGGUCGUCg -3'
miRNA:   3'- cuCCugga---CUACC-GCGCCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 38986 0.67 0.736855
Target:  5'- aGGGuCCUGggGGCggaGCGGCaGAUUGUg -3'
miRNA:   3'- cUCCuGGACuaCCG---CGCCG-CUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 39415 0.69 0.598783
Target:  5'- cGGGACCgg--GGCGCGGCcGUcCGCg -3'
miRNA:   3'- cUCCUGGacuaCCGCGCCGcUA-GCGg -5'
5138 3' -59.2 NC_001798.1 + 39660 0.68 0.648621
Target:  5'- cGGGGCCguaucGAccccGGCcccgGCGGCGAccUCGCCg -3'
miRNA:   3'- cUCCUGGa----CUa---CCG----CGCCGCU--AGCGG- -5'
5138 3' -59.2 NC_001798.1 + 45334 0.71 0.520552
Target:  5'- aGAGcGACgUGGUcauggaGGaCGUGGCGAUCGCg -3'
miRNA:   3'- -CUC-CUGgACUA------CC-GCGCCGCUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 47862 0.72 0.464587
Target:  5'- cGGGGGCCccgugGGCGcCGGCGggCGCUc -3'
miRNA:   3'- -CUCCUGGacua-CCGC-GCCGCuaGCGG- -5'
5138 3' -59.2 NC_001798.1 + 54728 0.68 0.688309
Target:  5'- -cGGACCUGggGGC-CGgacGCGGagGCCg -3'
miRNA:   3'- cuCCUGGACuaCCGcGC---CGCUagCGG- -5'
5138 3' -59.2 NC_001798.1 + 55756 0.66 0.800946
Target:  5'- gGGGGAUaagGGUGGC-CGGCGcgCugcaGCCg -3'
miRNA:   3'- -CUCCUGga-CUACCGcGCCGCuaG----CGG- -5'
5138 3' -59.2 NC_001798.1 + 55883 0.66 0.774185
Target:  5'- cGAGGACgaGggGGUacgagaaccaacGCGGCGAcgagCGCa -3'
miRNA:   3'- -CUCCUGgaCuaCCG------------CGCCGCUa---GCGg -5'
5138 3' -59.2 NC_001798.1 + 57401 0.71 0.473705
Target:  5'- -cGGGCCaGcgGGuCGUGGCGGUUGCa -3'
miRNA:   3'- cuCCUGGaCuaCC-GCGCCGCUAGCGg -5'
5138 3' -59.2 NC_001798.1 + 57737 0.66 0.809587
Target:  5'- aAGGACCggugGGCGCgcccGGCGcagcgaggaggGUUGCCg -3'
miRNA:   3'- cUCCUGGacuaCCGCG----CCGC-----------UAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 58696 0.71 0.482911
Target:  5'- cAGGGCCgcGgcGGCGCGGgGGUCGauCCa -3'
miRNA:   3'- cUCCUGGa-CuaCCGCGCCgCUAGC--GG- -5'
5138 3' -59.2 NC_001798.1 + 59815 0.7 0.559286
Target:  5'- cGAGGccuucuucuUCUGG-GGCGCcGCGGUCGCCc -3'
miRNA:   3'- -CUCCu--------GGACUaCCGCGcCGCUAGCGG- -5'
5138 3' -59.2 NC_001798.1 + 60209 0.7 0.530145
Target:  5'- -uGGACCUGGgcgcUGGUGCuGGaCGAcgCGCCc -3'
miRNA:   3'- cuCCUGGACU----ACCGCG-CC-GCUa-GCGG- -5'
5138 3' -59.2 NC_001798.1 + 60967 0.68 0.69814
Target:  5'- -cGGGCCcGGaGGCGCGGCcguuuguGUCGCa -3'
miRNA:   3'- cuCCUGGaCUaCCGCGCCGc------UAGCGg -5'
5138 3' -59.2 NC_001798.1 + 63734 0.69 0.638649
Target:  5'- -cGGGCCacauaGGCGCGGCG--CGCCu -3'
miRNA:   3'- cuCCUGGacua-CCGCGCCGCuaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.