Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5138 | 5' | -58.5 | NC_001798.1 | + | 61611 | 0.66 | 0.821312 |
Target: 5'- aCGGGUGUUUAcCCaaaaGUCCcuguUCCCCAu -3' miRNA: 3'- -GCCCGCAAGUaGGc---CAGGu---AGGGGUu -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 114336 | 0.66 | 0.821312 |
Target: 5'- aGGGCGUgugCAguUCgaGGUCCAccagCCCCu- -3' miRNA: 3'- gCCCGCAa--GU--AGg-CCAGGUa---GGGGuu -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 3023 | 0.66 | 0.821312 |
Target: 5'- gCGGGcCGggC-UCCGG-CCAgCCCCGg -3' miRNA: 3'- -GCCC-GCaaGuAGGCCaGGUaGGGGUu -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 44504 | 0.66 | 0.812796 |
Target: 5'- uCGGGUGgugggUCAcgCCcacuUCCGUCCCCAAu -3' miRNA: 3'- -GCCCGCa----AGUa-GGcc--AGGUAGGGGUU- -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 7048 | 0.66 | 0.795295 |
Target: 5'- cCGGG-GUUUccCCGGcCCAcCCCCAAa -3' miRNA: 3'- -GCCCgCAAGuaGGCCaGGUaGGGGUU- -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 40324 | 0.66 | 0.791724 |
Target: 5'- uCGGGCG-UCA-CCGcccccgcccccgCCGUCCCCAGa -3' miRNA: 3'- -GCCCGCaAGUaGGCca----------GGUAGGGGUU- -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 115521 | 0.67 | 0.777222 |
Target: 5'- gGGGCGUaCGUCgCGGccccggCCggCCCCGg -3' miRNA: 3'- gCCCGCAaGUAG-GCCa-----GGuaGGGGUu -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 151628 | 0.67 | 0.758646 |
Target: 5'- gGGGCGUgg--CCGcGUCCAUCaggCCCGc -3' miRNA: 3'- gCCCGCAaguaGGC-CAGGUAG---GGGUu -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 136005 | 0.67 | 0.758646 |
Target: 5'- gGGGCGgggagUCGGUCggCGUCCCCGu -3' miRNA: 3'- gCCCGCaaguaGGCCAG--GUAGGGGUu -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 41440 | 0.67 | 0.74919 |
Target: 5'- gCGGGCGUgggg--GGUCCAUgCCCCGc -3' miRNA: 3'- -GCCCGCAaguaggCCAGGUA-GGGGUu -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 10476 | 0.67 | 0.739634 |
Target: 5'- aGGGUGUaCAgaCCGcuGUCCGUCUCCAGg -3' miRNA: 3'- gCCCGCAaGUa-GGC--CAGGUAGGGGUU- -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 35548 | 0.68 | 0.720259 |
Target: 5'- gGGGCGUUg--CCGGcCCGgcccggCCCCGGa -3' miRNA: 3'- gCCCGCAAguaGGCCaGGUa-----GGGGUU- -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 110936 | 0.68 | 0.710457 |
Target: 5'- gCGGucaaacGCGgaCAUCCGGUCgaCGUCCCCc- -3' miRNA: 3'- -GCC------CGCaaGUAGGCCAG--GUAGGGGuu -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 4118 | 0.68 | 0.710457 |
Target: 5'- uGGGCGggcUCggCCGGggcgCCGcCCCCGGg -3' miRNA: 3'- gCCCGCa--AGuaGGCCa---GGUaGGGGUU- -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 57048 | 0.69 | 0.630434 |
Target: 5'- aCGGGCGgucCGUCCGGcCCcacaCCCAGu -3' miRNA: 3'- -GCCCGCaa-GUAGGCCaGGuag-GGGUU- -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 137332 | 0.7 | 0.600226 |
Target: 5'- gCGGGCGUggggUCGG-CCAUCCCUg- -3' miRNA: 3'- -GCCCGCAaguaGGCCaGGUAGGGGuu -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 123330 | 0.7 | 0.570222 |
Target: 5'- uGGuGCG-UC-UCCGGUCCcuUCCCCAc -3' miRNA: 3'- gCC-CGCaAGuAGGCCAGGu-AGGGGUu -5' |
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5138 | 5' | -58.5 | NC_001798.1 | + | 128903 | 1.06 | 0.00282 |
Target: 5'- cCGGGCGUUCAUCCGGUCCAUCCCCAAc -3' miRNA: 3'- -GCCCGCAAGUAGGCCAGGUAGGGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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