miRNA display CGI


Results 61 - 80 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 35554 0.67 0.358527
Target:  5'- uUGCC-GG-CCCgGCCcggCCCCGGAgCCCg -3'
miRNA:   3'- -AUGGaCCgGGGgCGG---GGGGUCUgGGG- -5'
5139 3' -67.5 NC_001798.1 + 94418 0.67 0.358527
Target:  5'- cUAUCUGcGCCCCCaGCCUaacggccggCCAGAcggcCCCCg -3'
miRNA:   3'- -AUGGAC-CGGGGG-CGGGg--------GGUCU----GGGG- -5'
5139 3' -67.5 NC_001798.1 + 80626 0.67 0.358527
Target:  5'- --gCUGGCCgCCGCgaCCCaCCGcACCCCc -3'
miRNA:   3'- augGACCGGgGGCG--GGG-GGUcUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 145544 0.67 0.358527
Target:  5'- cGCCcGGCCgCCCGCgUCgcgCCGGcGCCCCc -3'
miRNA:   3'- aUGGaCCGG-GGGCGgGG---GGUC-UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 146240 0.67 0.358527
Target:  5'- cGCCcccCCCCCGCCgCCCgacgaaggAGACCCa -3'
miRNA:   3'- aUGGaccGGGGGCGGgGGG--------UCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 32039 0.67 0.35632
Target:  5'- gGCCacgGGCCgCUCGCCCCggcguccgcgggcgCCGcGCCCCc -3'
miRNA:   3'- aUGGa--CCGG-GGGCGGGG--------------GGUcUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 1339 0.67 0.351208
Target:  5'- cGCCgcGGCCCgCGCagcuCCgCCGGGCCgCCg -3'
miRNA:   3'- aUGGa-CCGGGgGCGg---GG-GGUCUGG-GG- -5'
5139 3' -67.5 NC_001798.1 + 81904 0.67 0.351208
Target:  5'- cUGCUUuGCCCCUuCCgCCCGG-CCCCg -3'
miRNA:   3'- -AUGGAcCGGGGGcGGgGGGUCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 25920 0.67 0.351208
Target:  5'- cUACCUGGCCUgcgaggugCUGCCCgCCGGcaguGCgCCg -3'
miRNA:   3'- -AUGGACCGGG--------GGCGGGgGGUC----UGgGG- -5'
5139 3' -67.5 NC_001798.1 + 76332 0.67 0.349033
Target:  5'- gACCUGcuccagcggggccaGCCCCUagauGCCCCCgaGGACCUg -3'
miRNA:   3'- aUGGAC--------------CGGGGG----CGGGGGg-UCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 28802 0.67 0.343995
Target:  5'- cGCgCgGGUCCuCCGCCgCCgCGGGCCCg -3'
miRNA:   3'- aUG-GaCCGGG-GGCGGgGG-GUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 47412 0.67 0.343995
Target:  5'- uUACgCaGGCCCUCGCugcuCUCCCGuACCCCg -3'
miRNA:   3'- -AUG-GaCCGGGGGCG----GGGGGUcUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 81809 0.67 0.343995
Target:  5'- cGCC-GGCacuCCCCGCCCCggucGCCCCg -3'
miRNA:   3'- aUGGaCCG---GGGGCGGGGggucUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 11005 0.67 0.34328
Target:  5'- gGCCUcuccgacacuaCCCCCuuuauucuuuuuccuCCCCCCGGGCCCCg -3'
miRNA:   3'- aUGGAcc---------GGGGGc--------------GGGGGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 59804 0.67 0.34328
Target:  5'- gGCCUGGCCCUCgagGCCUUCUucuucugGGGCgCCg -3'
miRNA:   3'- aUGGACCGGGGG---CGGGGGG-------UCUGgGG- -5'
5139 3' -67.5 NC_001798.1 + 52753 0.67 0.341852
Target:  5'- cACgUGGaCCUUCGCCccgcguccucggcgCCCCGGGCgCCCg -3'
miRNA:   3'- aUGgACC-GGGGGCGG--------------GGGGUCUG-GGG- -5'
5139 3' -67.5 NC_001798.1 + 5724 0.67 0.341852
Target:  5'- aGCgCUGGCgCCCUGCCCggggcccgcgucauCCCGcGCUCCg -3'
miRNA:   3'- aUG-GACCG-GGGGCGGG--------------GGGUcUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 93235 0.67 0.339719
Target:  5'- cACgUGGCCCCUGCUUgagggccaggaaacgCCCGcGGCCCg -3'
miRNA:   3'- aUGgACCGGGGGCGGG---------------GGGU-CUGGGg -5'
5139 3' -67.5 NC_001798.1 + 122508 0.67 0.33689
Target:  5'- cGCUcgagGGaCCCCUGCgCCaCCCGcGCCCCg -3'
miRNA:   3'- aUGGa---CC-GGGGGCG-GG-GGGUcUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 128296 0.67 0.33689
Target:  5'- cGCCUGacGCgCCgCGCCCCCCcGuCCgCCg -3'
miRNA:   3'- aUGGAC--CGgGG-GCGGGGGGuCuGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.