miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 77079 0.66 0.388858
Target:  5'- -cCCUGuucGCCgaCGCCCCCgAGACgCCg -3'
miRNA:   3'- auGGAC---CGGggGCGGGGGgUCUGgGG- -5'
5139 3' -67.5 NC_001798.1 + 25306 0.66 0.388858
Target:  5'- -cCCUcGGCCgCCGCCCUggAGGCCUa -3'
miRNA:   3'- auGGA-CCGGgGGCGGGGggUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 108470 0.66 0.388858
Target:  5'- aGCCU-GCCCgaGCUCCCCgaggcgGGGCCCa -3'
miRNA:   3'- aUGGAcCGGGggCGGGGGG------UCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 31181 0.66 0.386525
Target:  5'- aACCUcccaGCCCgCCgcgacccgaccggcGCCCCCUGGcGCCCCg -3'
miRNA:   3'- aUGGAc---CGGG-GG--------------CGGGGGGUC-UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 150496 0.66 0.381119
Target:  5'- gACUgUGGCagaCCUCcCCCCCCGGGgCCCg -3'
miRNA:   3'- aUGG-ACCG---GGGGcGGGGGGUCUgGGG- -5'
5139 3' -67.5 NC_001798.1 + 60526 0.66 0.381119
Target:  5'- gGCCUGGCCCgUGaCCgUCAG-CUCCa -3'
miRNA:   3'- aUGGACCGGGgGCgGGgGGUCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 89276 0.66 0.381119
Target:  5'- gACCcgGGCCCCCugguaCCCaacgugCCGGcCCCCg -3'
miRNA:   3'- aUGGa-CCGGGGGc----GGGg-----GGUCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 3537 0.66 0.373484
Target:  5'- aGCCgaagcGGCCCgCCGCCauggcguaCCCCAGguggggcacgGCCCg -3'
miRNA:   3'- aUGGa----CCGGG-GGCGG--------GGGGUC----------UGGGg -5'
5139 3' -67.5 NC_001798.1 + 69853 0.66 0.373484
Target:  5'- cGCCgucGGCCgCCC-CCCCCCAcacacACuCCCa -3'
miRNA:   3'- aUGGa--CCGG-GGGcGGGGGGUc----UG-GGG- -5'
5139 3' -67.5 NC_001798.1 + 136217 0.66 0.373484
Target:  5'- aACCgGGgCCCCGUgCUCCAacuuACCCCc -3'
miRNA:   3'- aUGGaCCgGGGGCGgGGGGUc---UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 59213 0.66 0.373484
Target:  5'- cGCC--GCUCCCGCCcgcgaCCCCGGGgcuguCCCCg -3'
miRNA:   3'- aUGGacCGGGGGCGG-----GGGGUCU-----GGGG- -5'
5139 3' -67.5 NC_001798.1 + 29323 0.66 0.373484
Target:  5'- gGCUgaucGGCCCCUauugGUCCCCUGGGCUUCc -3'
miRNA:   3'- aUGGa---CCGGGGG----CGGGGGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 148587 0.66 0.371213
Target:  5'- -cCCUGGCCCCUGgCUUCgCGccgguggugcggcuGACCCCc -3'
miRNA:   3'- auGGACCGGGGGCgGGGG-GU--------------CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 71802 0.67 0.365953
Target:  5'- gACCUGaCCCCCaCCaCCCCGGccACgCCg -3'
miRNA:   3'- aUGGACcGGGGGcGG-GGGGUC--UGgGG- -5'
5139 3' -67.5 NC_001798.1 + 2813 0.67 0.365953
Target:  5'- cGCCgGGCCCaggGCCCCggcgaCCAGGCUCa -3'
miRNA:   3'- aUGGaCCGGGgg-CGGGG-----GGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 27975 0.67 0.365953
Target:  5'- gUGCC-GcGCCCCgGCgCUCCAGccgugccgcGCCCCg -3'
miRNA:   3'- -AUGGaC-CGGGGgCGgGGGGUC---------UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 128325 0.67 0.365953
Target:  5'- cGCCgaaGCCgUCGCCCCCC--GCCCg -3'
miRNA:   3'- aUGGac-CGGgGGCGGGGGGucUGGGg -5'
5139 3' -67.5 NC_001798.1 + 149260 0.67 0.365953
Target:  5'- gGCCggcgcgGGCgcgCCCUGCUCCCgAGACCa- -3'
miRNA:   3'- aUGGa-----CCG---GGGGCGGGGGgUCUGGgg -5'
5139 3' -67.5 NC_001798.1 + 118434 0.67 0.365205
Target:  5'- -cCCUG--CCCCGCCCCCUcucccacacggucGGugCCCc -3'
miRNA:   3'- auGGACcgGGGGCGGGGGG-------------UCugGGG- -5'
5139 3' -67.5 NC_001798.1 + 145544 0.67 0.358527
Target:  5'- cGCCcGGCCgCCCGCgUCgcgCCGGcGCCCCc -3'
miRNA:   3'- aUGGaCCGG-GGGCGgGG---GGUC-UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.