miRNA display CGI


Results 41 - 60 of 323 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 21156 0.72 0.160412
Target:  5'- gGCCcgucCCCCCGUCCCCCcGGCCCg -3'
miRNA:   3'- aUGGacc-GGGGGCGGGGGGuCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 21187 0.69 0.277787
Target:  5'- -cCCgucCCCCCGUCCCCCcGuCCCCc -3'
miRNA:   3'- auGGaccGGGGGCGGGGGGuCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 21211 0.69 0.277787
Target:  5'- -cCCgucCCCCCGUCCCCCcGuCCCCc -3'
miRNA:   3'- auGGaccGGGGGCGGGGGGuCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 21235 0.69 0.277787
Target:  5'- -cCCgucCCCCCGUCCCCCcGuCCCCc -3'
miRNA:   3'- auGGaccGGGGGCGGGGGGuCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 21259 0.69 0.277787
Target:  5'- -cCCgucCCCCCGUCCCCCcGuCCCCc -3'
miRNA:   3'- auGGaccGGGGGCGGGGGGuCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 21283 0.69 0.277787
Target:  5'- -cCCgucCCCCCGUCCCCCcGuCCCCc -3'
miRNA:   3'- auGGaccGGGGGCGGGGGGuCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 21318 0.82 0.032804
Target:  5'- gGCCccccGGCCCCCcgGCCCCCCGGcCCCCc -3'
miRNA:   3'- aUGGa---CCGGGGG--CGGGGGGUCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 21359 0.69 0.260011
Target:  5'- -cCCcGGCCcguccccccggCCCGUCCCCCcGGCCCg -3'
miRNA:   3'- auGGaCCGG-----------GGGCGGGGGGuCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 21398 0.69 0.260011
Target:  5'- -cCCcGGCCcguccccccggCCCGUCCCCCcGGCCCg -3'
miRNA:   3'- auGGaCCGG-----------GGGCGGGGGGuCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 21454 0.71 0.204561
Target:  5'- gGCCcgucCCCCCGUCCCCCGcccguccccccggccGGCCCCc -3'
miRNA:   3'- aUGGacc-GGGGGCGGGGGGU---------------CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 21779 0.68 0.302979
Target:  5'- cGCgaGGaacggCCCGCCCCCCguccGGGCCCg -3'
miRNA:   3'- aUGgaCCgg---GGGCGGGGGG----UCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 21935 0.69 0.268189
Target:  5'- -cCCUGcGgCCCCGCCCCCUuugggcggAGcgcgggaugacgcggGCCCCg -3'
miRNA:   3'- auGGAC-CgGGGGCGGGGGG--------UC---------------UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 22072 0.69 0.242627
Target:  5'- -cCCUGcGgCCCCGCCCCCUuugGGGCggagccgCCCg -3'
miRNA:   3'- auGGAC-CgGGGGCGGGGGG---UCUG-------GGG- -5'
5139 3' -67.5 NC_001798.1 + 22450 0.7 0.232458
Target:  5'- -uCCUuucCCCCCGCCCCgCGcGCCCCg -3'
miRNA:   3'- auGGAcc-GGGGGCGGGGgGUcUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 22806 0.66 0.404641
Target:  5'- gACCggcGGCCCCgGaUCUCCGGAUCCa -3'
miRNA:   3'- aUGGa--CCGGGGgCgGGGGGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 23286 0.7 0.232458
Target:  5'- aGCCU-GUCgCCGCgaCCCCCGGcGCCCCg -3'
miRNA:   3'- aUGGAcCGGgGGCG--GGGGGUC-UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 23489 0.69 0.265831
Target:  5'- cGCCcGcGCCCCCGCCagcgCCgCAGACCacgCCg -3'
miRNA:   3'- aUGGaC-CGGGGGCGGg---GG-GUCUGG---GG- -5'
5139 3' -67.5 NC_001798.1 + 23602 0.79 0.051763
Target:  5'- cGCCcagGGCCgagCCCGCCCcggCCCGGACCCCc -3'
miRNA:   3'- aUGGa--CCGG---GGGCGGG---GGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 23642 0.66 0.396699
Target:  5'- gACCgcgGGCCgCCUggaGCgCCgCCGGGCCCg -3'
miRNA:   3'- aUGGa--CCGG-GGG---CGgGG-GGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 23816 0.75 0.103916
Target:  5'- gGCC-GGcCCCCCGCCCCCgGGGCgCg -3'
miRNA:   3'- aUGGaCC-GGGGGCGGGGGgUCUGgGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.