miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 4034 0.68 0.309545
Target:  5'- gGCC-GGCCaCCGCCgCgCGGGCCCg -3'
miRNA:   3'- aUGGaCCGGgGGCGGgGgGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 4129 0.76 0.085335
Target:  5'- gGCCgGGgCgCCGCCCCCgGGGCCCUc -3'
miRNA:   3'- aUGGaCCgGgGGCGGGGGgUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 4440 0.67 0.358527
Target:  5'- gGCCauggGGUCCggguaCGCCCCgCGGACCgCg -3'
miRNA:   3'- aUGGa---CCGGGg----GCGGGGgGUCUGGgG- -5'
5139 3' -67.5 NC_001798.1 + 5547 0.75 0.09654
Target:  5'- aUGCC-GGCCCCgCGCUCCCguuGGCCCCc -3'
miRNA:   3'- -AUGGaCCGGGG-GCGGGGGgu-CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 5724 0.67 0.341852
Target:  5'- aGCgCUGGCgCCCUGCCCggggcccgcgucauCCCGcGCUCCg -3'
miRNA:   3'- aUG-GACCG-GGGGCGGG--------------GGGUcUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 5862 0.69 0.250915
Target:  5'- aGCaCUGGCgCCCUGCCcggggcccgcgucauCCCgCGGGCUCCg -3'
miRNA:   3'- aUG-GACCG-GGGGCGG---------------GGG-GUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 7175 0.66 0.412683
Target:  5'- gACCgacgGGCCCCCGCa-CCgGGGCggcgaCCa -3'
miRNA:   3'- aUGGa---CCGGGGGCGggGGgUCUGg----GG- -5'
5139 3' -67.5 NC_001798.1 + 7404 0.71 0.193519
Target:  5'- aUACCcagGGaCCCgCGaCCCCCAcGACCCCc -3'
miRNA:   3'- -AUGGa--CC-GGGgGCgGGGGGU-CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 7495 0.78 0.055824
Target:  5'- aGCCcGGUCCCCuacGCCCCCCucggcagcccGGACCCCu -3'
miRNA:   3'- aUGGaCCGGGGG---CGGGGGG----------UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 7584 0.66 0.412683
Target:  5'- ----cGcGCCCgCGUCCgacaCCCGGGCCCCa -3'
miRNA:   3'- auggaC-CGGGgGCGGG----GGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 7639 0.75 0.103916
Target:  5'- gACC-GGCCCCCggaGUCCCCCGG-CUCCg -3'
miRNA:   3'- aUGGaCCGGGGG---CGGGGGGUCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 11005 0.67 0.34328
Target:  5'- gGCCUcuccgacacuaCCCCCuuuauucuuuuuccuCCCCCCGGGCCCCg -3'
miRNA:   3'- aUGGAcc---------GGGGGc--------------GGGGGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 14608 0.69 0.277787
Target:  5'- aUACCUcccacCCCCCG-CCCCCAGuCCCa -3'
miRNA:   3'- -AUGGAcc---GGGGGCgGGGGGUCuGGGg -5'
5139 3' -67.5 NC_001798.1 + 16244 0.69 0.243172
Target:  5'- gGCCggGGCCCuccCCGCCCaCCucuacccacaaCAGACCCa -3'
miRNA:   3'- aUGGa-CCGGG---GGCGGG-GG-----------GUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 16922 0.7 0.227251
Target:  5'- aACCa-GCCCCC-CCCUCCAcGCCCCc -3'
miRNA:   3'- aUGGacCGGGGGcGGGGGGUcUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 17425 0.66 0.396699
Target:  5'- cGCC--GCCCCaaaGUCCCCCAGACa-- -3'
miRNA:   3'- aUGGacCGGGGg--CGGGGGGUCUGggg -5'
5139 3' -67.5 NC_001798.1 + 18805 0.73 0.139027
Target:  5'- -uCCUGGCCUCCgaGCCUCUgGGAaCCCCg -3'
miRNA:   3'- auGGACCGGGGG--CGGGGGgUCU-GGGG- -5'
5139 3' -67.5 NC_001798.1 + 19170 0.7 0.213685
Target:  5'- aACCgUGGCCCCUGCCcgaucgguuuuugCCCgagcggaccgugucgUGGACCCCg -3'
miRNA:   3'- aUGG-ACCGGGGGCGG-------------GGG---------------GUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 21073 0.74 0.114579
Target:  5'- gAUCgGGgCCCCGUCCCCCcGGCCCg -3'
miRNA:   3'- aUGGaCCgGGGGCGGGGGGuCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 21114 0.72 0.160412
Target:  5'- gGCCcgucCCCCCGUCCCCCcGGCCCg -3'
miRNA:   3'- aUGGacc-GGGGGCGGGGGGuCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.