miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 147472 0.67 0.329892
Target:  5'- cGCgUGaGCCgUCCGCCgggggaCCCAGGCUCCg -3'
miRNA:   3'- aUGgAC-CGG-GGGCGGg-----GGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 147297 0.68 0.309545
Target:  5'- -cCCgGGCcgCCCCG-CUCCCGGGCCCg -3'
miRNA:   3'- auGGaCCG--GGGGCgGGGGGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 147215 0.76 0.083248
Target:  5'- gGCCcgGGCCCCCgGCggagcgcgggggCCCCgGGGCCCCg -3'
miRNA:   3'- aUGGa-CCGGGGG-CG------------GGGGgUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 147057 0.75 0.103916
Target:  5'- gGCCggaggGGCCCCCGCaCCUCGGcggccGCCCCc -3'
miRNA:   3'- aUGGa----CCGGGGGCGgGGGGUC-----UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 146605 0.72 0.168177
Target:  5'- cGCCagcGGCCCaCGCCUCCCgccgcauuAGGCCCCc -3'
miRNA:   3'- aUGGa--CCGGGgGCGGGGGG--------UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 146240 0.67 0.358527
Target:  5'- cGCCcccCCCCCGCCgCCCgacgaaggAGACCCa -3'
miRNA:   3'- aUGGaccGGGGGCGGgGGG--------UCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 145938 0.74 0.123237
Target:  5'- aGCCgGGCCCCCccccaccacccGCCCaCCCAccuACCCCg -3'
miRNA:   3'- aUGGaCCGGGGG-----------CGGG-GGGUc--UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 145729 0.69 0.254295
Target:  5'- gGCCccGGCCCgCGCCCCgCCgccacacccacGGcACCCCc -3'
miRNA:   3'- aUGGa-CCGGGgGCGGGG-GG-----------UC-UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 145621 0.69 0.271756
Target:  5'- gACCccGCCCcaCCGCCCCgCCcggcagggGGGCCCCg -3'
miRNA:   3'- aUGGacCGGG--GGCGGGG-GG--------UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 145544 0.67 0.358527
Target:  5'- cGCCcGGCCgCCCGCgUCgcgCCGGcGCCCCc -3'
miRNA:   3'- aUGGaCCGG-GGGCGgGG---GGUC-UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 145502 0.7 0.237765
Target:  5'- cGCCcGGCCgCCgCGCgCCCCCGcccGGCCgCCg -3'
miRNA:   3'- aUGGaCCGG-GG-GCG-GGGGGU---CUGG-GG- -5'
5139 3' -67.5 NC_001798.1 + 145460 0.7 0.237765
Target:  5'- cGCCcGGCCgCCgCGCgCCCCCGcccGGCCgCCg -3'
miRNA:   3'- aUGGaCCGG-GG-GCG-GGGGGU---CUGG-GG- -5'
5139 3' -67.5 NC_001798.1 + 145418 0.7 0.237765
Target:  5'- cGCCcGGCCgCCgCGCgCCCCCGcccGGCCgCCg -3'
miRNA:   3'- aUGGaCCGG-GG-GCG-GGGGGU---CUGG-GG- -5'
5139 3' -67.5 NC_001798.1 + 145106 0.81 0.038209
Target:  5'- uUGCCUGugacccaCCCCaCGCCCCCCAGGCuCCCa -3'
miRNA:   3'- -AUGGACc------GGGG-GCGGGGGGUCUG-GGG- -5'
5139 3' -67.5 NC_001798.1 + 142538 0.68 0.29652
Target:  5'- gACCacacCCCCCGCCCCCguauCCCCa -3'
miRNA:   3'- aUGGacc-GGGGGCGGGGGgucuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 139851 0.66 0.396699
Target:  5'- -cCCUGGCcagcagCCCCGCCUCgCUggaAGACCUg -3'
miRNA:   3'- auGGACCG------GGGGCGGGG-GG---UCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 137919 0.72 0.168177
Target:  5'- cGCCgggcGGCCCgCGCCuCCCCcGGCCgCCc -3'
miRNA:   3'- aUGGa---CCGGGgGCGG-GGGGuCUGG-GG- -5'
5139 3' -67.5 NC_001798.1 + 137241 0.66 0.403843
Target:  5'- cGCCUGGuugcugauccCCUCCGCCaCCucgaCCAGAcugcgguCCCCg -3'
miRNA:   3'- aUGGACC----------GGGGGCGG-GG----GGUCU-------GGGG- -5'
5139 3' -67.5 NC_001798.1 + 136217 0.66 0.373484
Target:  5'- aACCgGGgCCCCGUgCUCCAacuuACCCCc -3'
miRNA:   3'- aUGGaCCgGGGGCGgGGGGUc---UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 135280 0.7 0.237765
Target:  5'- cGCUggUGGCggCCGCCCCCuCGGAgCCCu -3'
miRNA:   3'- aUGG--ACCGggGGCGGGGG-GUCUgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.