miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 154436 0.66 0.420823
Target:  5'- gGCa--GCCCCgCGCgCCCCCuu-CCCCg -3'
miRNA:   3'- aUGgacCGGGG-GCG-GGGGGucuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 153440 0.69 0.260011
Target:  5'- gGCCaGGCgCgcggCCGUCUCCCAGGCCaCCa -3'
miRNA:   3'- aUGGaCCGgG----GGCGGGGGGUCUGG-GG- -5'
5139 3' -67.5 NC_001798.1 + 153187 0.68 0.322319
Target:  5'- gGCCgaggccGCCCUCGCCgguucaaCCCUAGACCgCCc -3'
miRNA:   3'- aUGGac----CGGGGGCGG-------GGGGUCUGG-GG- -5'
5139 3' -67.5 NC_001798.1 + 152106 0.68 0.302979
Target:  5'- gGCCccgucaaGcGUCCCCGCCCCCgAG-CCCa -3'
miRNA:   3'- aUGGa------C-CGGGGGCGGGGGgUCuGGGg -5'
5139 3' -67.5 NC_001798.1 + 151996 0.68 0.323002
Target:  5'- -cCCUGuCCCCCG-CUCUCGGGCUCCu -3'
miRNA:   3'- auGGACcGGGGGCgGGGGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 151547 0.66 0.420823
Target:  5'- cACCcacgGGCCCa--CCCCCacaGGAUCCCu -3'
miRNA:   3'- aUGGa---CCGGGggcGGGGGg--UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 151092 0.73 0.1424
Target:  5'- gACCc--CCgCCCGCCCCCCGcccGACCCCc -3'
miRNA:   3'- aUGGaccGG-GGGCGGGGGGU---CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 151054 0.71 0.189074
Target:  5'- cGCCcGaCCCCCGCccgaCCCCCGcccGACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCG----GGGGGU---CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 151021 0.71 0.189074
Target:  5'- cGCCcGaCCCCCGCccgaCCCCCGcccGACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCG----GGGGGU---CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 150987 0.71 0.180454
Target:  5'- gUGCCcGaCCCCCGCccgaCCCCCGcccGACCCCc -3'
miRNA:   3'- -AUGGaCcGGGGGCG----GGGGGU---CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 150758 0.69 0.254295
Target:  5'- gGCCgcgacggcagGGCCgCCC-CCagaCCCAGAUCCCa -3'
miRNA:   3'- aUGGa---------CCGG-GGGcGGg--GGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 150701 0.66 0.412683
Target:  5'- cGCCU-GCgCgCGCCCCCCGccGGCCgCa -3'
miRNA:   3'- aUGGAcCGgGgGCGGGGGGU--CUGGgG- -5'
5139 3' -67.5 NC_001798.1 + 150496 0.66 0.381119
Target:  5'- gACUgUGGCagaCCUCcCCCCCCGGGgCCCg -3'
miRNA:   3'- aUGG-ACCG---GGGGcGGGGGGUCUgGGG- -5'
5139 3' -67.5 NC_001798.1 + 150043 0.69 0.248682
Target:  5'- -uCCggGGCCCggcgcggcgCCGCCCUCUuGGCCCCc -3'
miRNA:   3'- auGGa-CCGGG---------GGCGGGGGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 149260 0.67 0.365953
Target:  5'- gGCCggcgcgGGCgcgCCCUGCUCCCgAGACCa- -3'
miRNA:   3'- aUGGa-----CCG---GGGGCGGGGGgUCUGGgg -5'
5139 3' -67.5 NC_001798.1 + 149144 0.71 0.189074
Target:  5'- cACCUc-CCCCUGCCCCCgAGGCgCCu -3'
miRNA:   3'- aUGGAccGGGGGCGGGGGgUCUGgGG- -5'
5139 3' -67.5 NC_001798.1 + 149076 0.66 0.396699
Target:  5'- gGCCguguccGUCCCCcCCCCCCAcucccACCCCc -3'
miRNA:   3'- aUGGac----CGGGGGcGGGGGGUc----UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 148587 0.66 0.371213
Target:  5'- -cCCUGGCCCCUGgCUUCgCGccgguggugcggcuGACCCCc -3'
miRNA:   3'- auGGACCGGGGGCgGGGG-GU--------------CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 148546 0.71 0.18472
Target:  5'- -cCCUcGCCCCCGCCCCaCUuu-CCCCc -3'
miRNA:   3'- auGGAcCGGGGGCGGGG-GGucuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 147956 0.69 0.254295
Target:  5'- cGCC-GGUCaCCC-CCCCCCAacaACCCCa -3'
miRNA:   3'- aUGGaCCGG-GGGcGGGGGGUc--UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.