miRNA display CGI


Results 1 - 20 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 128759 1.07 0.000369
Target:  5'- cUACCUGGCCCCCGCCCCCCAGACCCCc -3'
miRNA:   3'- -AUGGACCGGGGGCGGGGGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 111735 0.9 0.007032
Target:  5'- cGCUUGGCCCCCGCgCCCCCGG-CCCCg -3'
miRNA:   3'- aUGGACCGGGGGCG-GGGGGUCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 75188 0.86 0.016027
Target:  5'- cGCUgggGGCCCgCCGCCCCCCGGAgCCCCc -3'
miRNA:   3'- aUGGa--CCGGG-GGCGGGGGGUCU-GGGG- -5'
5139 3' -67.5 NC_001798.1 + 92511 0.85 0.018222
Target:  5'- cACCUGGCCCCCaGCa-CCCAGGCCCCc -3'
miRNA:   3'- aUGGACCGGGGG-CGggGGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 128056 0.82 0.031175
Target:  5'- gACUgcaGCCCCgGUCCCCCGGACCCCg -3'
miRNA:   3'- aUGGac-CGGGGgCGGGGGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 21318 0.82 0.032804
Target:  5'- gGCCccccGGCCCCCcgGCCCCCCGGcCCCCc -3'
miRNA:   3'- aUGGa---CCGGGGG--CGGGGGGUCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 145106 0.81 0.038209
Target:  5'- uUGCCUGugacccaCCCCaCGCCCCCCAGGCuCCCa -3'
miRNA:   3'- -AUGGACc------GGGG-GCGGGGGGUCUG-GGG- -5'
5139 3' -67.5 NC_001798.1 + 115323 0.8 0.041126
Target:  5'- gACCUGGUgCCCGCCCccggccaCCCGGAgCCCCg -3'
miRNA:   3'- aUGGACCGgGGGCGGG-------GGGUCU-GGGG- -5'
5139 3' -67.5 NC_001798.1 + 45522 0.8 0.041231
Target:  5'- cGCCccgGGCCCgUGCCCCCCgcGGACCCUa -3'
miRNA:   3'- aUGGa--CCGGGgGCGGGGGG--UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 23602 0.79 0.051763
Target:  5'- cGCCcagGGCCgagCCCGCCCcggCCCGGACCCCc -3'
miRNA:   3'- aUGGa--CCGG---GGGCGGG---GGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 7495 0.78 0.055824
Target:  5'- aGCCcGGUCCCCuacGCCCCCCucggcagcccGGACCCCu -3'
miRNA:   3'- aUGGaCCGGGGG---CGGGGGG----------UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 74635 0.78 0.060194
Target:  5'- gGCCgaccGGCCCCCcgagGCCCCCCgggGGGCCUCg -3'
miRNA:   3'- aUGGa---CCGGGGG----CGGGGGG---UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 87729 0.78 0.064894
Target:  5'- cGCC-GGCCCCCGCCggcccgaaCCCCGcGGCCCUg -3'
miRNA:   3'- aUGGaCCGGGGGCGG--------GGGGU-CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 112979 0.77 0.066537
Target:  5'- -uUUUGGCCUCCGCCCCCCAu-CCCUg -3'
miRNA:   3'- auGGACCGGGGGCGGGGGGUcuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 48398 0.77 0.070648
Target:  5'- gACCgcacgGGCCCCCGCCCgCUCGGcuucccguccccgccGCCCCc -3'
miRNA:   3'- aUGGa----CCGGGGGCGGG-GGGUC---------------UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 54862 0.76 0.079219
Target:  5'- cGCCUGGCCggccgaaagCCaCGCCCCCCcGcCCCCu -3'
miRNA:   3'- aUGGACCGG---------GG-GCGGGGGGuCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 74782 0.76 0.081008
Target:  5'- gGCCUcgGGUccaccgcacgccgCCCCGCCCCCgCAGACaCCCg -3'
miRNA:   3'- aUGGA--CCG-------------GGGGCGGGGG-GUCUG-GGG- -5'
5139 3' -67.5 NC_001798.1 + 682 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 832 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 802 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.