miRNA display CGI


Results 1 - 20 of 323 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 98 0.66 0.420823
Target:  5'- gGCa--GCCCCgCGCgCCCCCuu-CCCCg -3'
miRNA:   3'- aUGgacCGGGG-GCG-GGGGGucuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 285 0.72 0.176276
Target:  5'- -cCCaaGCuCCCCGCCCCCCcgaAGACgCCa -3'
miRNA:   3'- auGGacCG-GGGGCGGGGGG---UCUGgGG- -5'
5139 3' -67.5 NC_001798.1 + 483 0.7 0.217134
Target:  5'- cGCCU--CCCCCGCgCCCC--GCCCCg -3'
miRNA:   3'- aUGGAccGGGGGCGgGGGGucUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 508 0.68 0.316219
Target:  5'- gGCUU--CCCCCGCCCcuccccccgcgCCCGcGGCCCCg -3'
miRNA:   3'- aUGGAccGGGGGCGGG-----------GGGU-CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 682 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 712 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 742 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 772 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 802 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 832 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 862 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 892 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 1197 0.67 0.329892
Target:  5'- cGCCgcGGCCagcaCCGUCCCCgCGcGGCCCg -3'
miRNA:   3'- aUGGa-CCGGg---GGCGGGGG-GU-CUGGGg -5'
5139 3' -67.5 NC_001798.1 + 1339 0.67 0.351208
Target:  5'- cGCCgcGGCCCgCGCagcuCCgCCGGGCCgCCg -3'
miRNA:   3'- aUGGa-CCGGGgGCGg---GG-GGUCUGG-GG- -5'
5139 3' -67.5 NC_001798.1 + 2813 0.67 0.365953
Target:  5'- cGCCgGGCCCaggGCCCCggcgaCCAGGCUCa -3'
miRNA:   3'- aUGGaCCGGGgg-CGGGG-----GGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 3026 0.68 0.29652
Target:  5'- gGCCgGGCUCCgGCCagCCCCGGcacgGCCgCCa -3'
miRNA:   3'- aUGGaCCGGGGgCGG--GGGGUC----UGG-GG- -5'
5139 3' -67.5 NC_001798.1 + 3505 0.68 0.290169
Target:  5'- gGCCacggcGGCCgCCaCGUgCgCCAGGCCCCa -3'
miRNA:   3'- aUGGa----CCGG-GG-GCGgGgGGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 3537 0.66 0.373484
Target:  5'- aGCCgaagcGGCCCgCCGCCauggcguaCCCCAGguggggcacgGCCCg -3'
miRNA:   3'- aUGGa----CCGGG-GGCGG--------GGGGUC----------UGGGg -5'
5139 3' -67.5 NC_001798.1 + 3646 0.74 0.120285
Target:  5'- gGCCUGGUCCagCGCCacguCCCCGGGCgCCa -3'
miRNA:   3'- aUGGACCGGGg-GCGG----GGGGUCUGgGG- -5'
5139 3' -67.5 NC_001798.1 + 3809 0.71 0.202683
Target:  5'- aACCgGGCCCgCGCCUCCUccGCCUCg -3'
miRNA:   3'- aUGGaCCGGGgGCGGGGGGucUGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.