miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 892 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 802 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 742 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 832 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 862 0.76 0.08121
Target:  5'- cGCCcGaCCCCCGCCCgCCC-GACCCCc -3'
miRNA:   3'- aUGGaCcGGGGGCGGG-GGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 147215 0.76 0.083248
Target:  5'- gGCCcgGGCCCCCgGCggagcgcgggggCCCCgGGGCCCCg -3'
miRNA:   3'- aUGGa-CCGGGGG-CG------------GGGGgUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 4129 0.76 0.085335
Target:  5'- gGCCgGGgCgCCGCCCCCgGGGCCCUc -3'
miRNA:   3'- aUGGaCCgGgGGCGGGGGgUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 24691 0.76 0.085335
Target:  5'- aGCCcGGCCCgCCGCgCCCCCGcGCCCg -3'
miRNA:   3'- aUGGaCCGGG-GGCG-GGGGGUcUGGGg -5'
5139 3' -67.5 NC_001798.1 + 80961 0.76 0.0919
Target:  5'- gUGCCUGGUCCUCGUggacaUCUCCAuGACCCCg -3'
miRNA:   3'- -AUGGACCGGGGGCG-----GGGGGU-CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 127757 0.76 0.0919
Target:  5'- cACCcGGCgCCaagCGCCCCgCGGACCCCg -3'
miRNA:   3'- aUGGaCCG-GGg--GCGGGGgGUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 74970 0.75 0.09654
Target:  5'- gACCUcgGGCgagaggCCCGCCCCCaAGGCCCCg -3'
miRNA:   3'- aUGGA--CCGg-----GGGCGGGGGgUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 5547 0.75 0.09654
Target:  5'- aUGCC-GGCCCCgCGCUCCCguuGGCCCCc -3'
miRNA:   3'- -AUGGaCCGGGG-GCGGGGGgu-CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 47932 0.75 0.09654
Target:  5'- cGCCUaaGGCCUCCGCgaCCCCGgcgaccGACCCCg -3'
miRNA:   3'- aUGGA--CCGGGGGCGg-GGGGU------CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 76004 0.75 0.1014
Target:  5'- cGCCggcggcagGGCCccgugCCCGCCCgCCCuGGGCCCCg -3'
miRNA:   3'- aUGGa-------CCGG-----GGGCGGG-GGG-UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 81450 0.75 0.1014
Target:  5'- cGCCggcGGCCCCaCGCCCaauCCGG-CCCCg -3'
miRNA:   3'- aUGGa--CCGGGG-GCGGGg--GGUCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 107437 0.75 0.1014
Target:  5'- cGCCgcGGCgaCCCCGCgCCCC-GACCCCg -3'
miRNA:   3'- aUGGa-CCG--GGGGCGgGGGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 7639 0.75 0.103916
Target:  5'- gACC-GGCCCCCggaGUCCCCCGG-CUCCg -3'
miRNA:   3'- aUGGaCCGGGGG---CGGGGGGUCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 147057 0.75 0.103916
Target:  5'- gGCCggaggGGCCCCCGCaCCUCGGcggccGCCCCc -3'
miRNA:   3'- aUGGa----CCGGGGGCGgGGGGUC-----UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 35021 0.75 0.103916
Target:  5'- gGCCaaGCCCCgGCCCgCCCGGGgguCCCCg -3'
miRNA:   3'- aUGGacCGGGGgCGGG-GGGUCU---GGGG- -5'
5139 3' -67.5 NC_001798.1 + 23816 0.75 0.103916
Target:  5'- gGCC-GGcCCCCCGCCCCCgGGGCgCg -3'
miRNA:   3'- aUGGaCC-GGGGGCGGGGGgUCUGgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.