miRNA display CGI


Results 21 - 40 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 62255 0.66 0.404641
Target:  5'- gACC--GCCCCgaGCCgaUCCCAGGCCCg -3'
miRNA:   3'- aUGGacCGGGGg-CGG--GGGGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 66826 0.66 0.404641
Target:  5'- aGCCcGGCCCggugCCGgCgCCCAGGCCg- -3'
miRNA:   3'- aUGGaCCGGG----GGCgGgGGGUCUGGgg -5'
5139 3' -67.5 NC_001798.1 + 134990 0.66 0.404641
Target:  5'- gGCCUGGCCCgcggugggcgCCagggucguccuGCCCCCgCGGGCauggCCg -3'
miRNA:   3'- aUGGACCGGG----------GG-----------CGGGGG-GUCUGg---GG- -5'
5139 3' -67.5 NC_001798.1 + 31105 0.66 0.404641
Target:  5'- cUGCagUGGacuacgucCCgCCCGCCCCCCGaagagcGCCCCg -3'
miRNA:   3'- -AUGg-ACC--------GG-GGGCGGGGGGUc-----UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 85684 0.66 0.404641
Target:  5'- gUGCCcgGGCgCCaCGCCCagaagcaaCCCAGGCCg- -3'
miRNA:   3'- -AUGGa-CCGgGG-GCGGG--------GGGUCUGGgg -5'
5139 3' -67.5 NC_001798.1 + 137241 0.66 0.403843
Target:  5'- cGCCUGGuugcugauccCCUCCGCCaCCucgaCCAGAcugcgguCCCCg -3'
miRNA:   3'- aUGGACC----------GGGGGCGG-GG----GGUCU-------GGGG- -5'
5139 3' -67.5 NC_001798.1 + 29731 0.66 0.402248
Target:  5'- gACCgcgGGCCgCCGUCucgagucuacccuaCCCCGGcucauggaACCCCg -3'
miRNA:   3'- aUGGa--CCGGgGGCGG--------------GGGGUC--------UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 91818 0.66 0.396699
Target:  5'- gACCgugggcggGGCCCgacgCCGCCCcuCCCAGcACgCCg -3'
miRNA:   3'- aUGGa-------CCGGG----GGCGGG--GGGUC-UGgGG- -5'
5139 3' -67.5 NC_001798.1 + 17425 0.66 0.396699
Target:  5'- cGCC--GCCCCaaaGUCCCCCAGACa-- -3'
miRNA:   3'- aUGGacCGGGGg--CGGGGGGUCUGggg -5'
5139 3' -67.5 NC_001798.1 + 23642 0.66 0.396699
Target:  5'- gACCgcgGGCCgCCUggaGCgCCgCCGGGCCCg -3'
miRNA:   3'- aUGGa--CCGG-GGG---CGgGG-GGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 27733 0.66 0.396699
Target:  5'- -uCCU-GCCgCCGCCCCUUaagaGGGCCCg -3'
miRNA:   3'- auGGAcCGGgGGCGGGGGG----UCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 89382 0.66 0.396699
Target:  5'- -uCCccGUUCCCGUCCCCCGGccgcuCCCCu -3'
miRNA:   3'- auGGacCGGGGGCGGGGGGUCu----GGGG- -5'
5139 3' -67.5 NC_001798.1 + 149076 0.66 0.396699
Target:  5'- gGCCguguccGUCCCCcCCCCCCAcucccACCCCc -3'
miRNA:   3'- aUGGac----CGGGGGcGGGGGGUc----UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 58846 0.66 0.396699
Target:  5'- cGCCgcguaggcGGCCCCgagCGCCaggcacugggUCCCGGGCCCg -3'
miRNA:   3'- aUGGa-------CCGGGG---GCGG----------GGGGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 70115 0.66 0.396699
Target:  5'- -uCCaGGUCCCggCGCCCgCCGgcauGACCCCc -3'
miRNA:   3'- auGGaCCGGGG--GCGGGgGGU----CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 139851 0.66 0.396699
Target:  5'- -cCCUGGCcagcagCCCCGCCUCgCUggaAGACCUg -3'
miRNA:   3'- auGGACCG------GGGGCGGGG-GG---UCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 42857 0.66 0.395911
Target:  5'- cGCCaGcGCCCCgCGCCUaaagugaCCCAgGGCCUCg -3'
miRNA:   3'- aUGGaC-CGGGG-GCGGG-------GGGU-CUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 104149 0.66 0.394336
Target:  5'- cGCCagUGGCcgCCCCGCCUgggcgUCCAGgcacagggcggccaGCCCCg -3'
miRNA:   3'- aUGG--ACCG--GGGGCGGG-----GGGUC--------------UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 25786 0.66 0.394336
Target:  5'- gACCUGGCCUUCGCCggcgccguggaguuCCUgGGGCUgCu -3'
miRNA:   3'- aUGGACCGGGGGCGG--------------GGGgUCUGGgG- -5'
5139 3' -67.5 NC_001798.1 + 85237 0.66 0.388858
Target:  5'- gACgUcGCgCCCGCCCCCCcgcGGCCgCg -3'
miRNA:   3'- aUGgAcCGgGGGCGGGGGGu--CUGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.