miRNA display CGI


Results 41 - 60 of 323 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5139 3' -67.5 NC_001798.1 + 27919 0.74 0.111821
Target:  5'- cGCCggGGUCCCCGCCgCCgGGGUCCCg -3'
miRNA:   3'- aUGGa-CCGGGGGCGGgGGgUCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 42997 0.74 0.111821
Target:  5'- cAUCUGGCCCCCgacggccagGCCgCCCggggggagcgcgGGGCCCCg -3'
miRNA:   3'- aUGGACCGGGGG---------CGGgGGG------------UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 21073 0.74 0.114579
Target:  5'- gAUCgGGgCCCCGUCCCCCcGGCCCg -3'
miRNA:   3'- aUGGaCCgGGGGCGGGGGGuCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 82247 0.74 0.114579
Target:  5'- gACCaGcCCCCCGCCuuuggCCCCAGGCCCg -3'
miRNA:   3'- aUGGaCcGGGGGCGG-----GGGGUCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 52831 0.74 0.114579
Target:  5'- gACCUGGCggccuucccCCCCGCCCCCCugaauagcGAgUCCg -3'
miRNA:   3'- aUGGACCG---------GGGGCGGGGGGu-------CUgGGG- -5'
5139 3' -67.5 NC_001798.1 + 98746 0.74 0.1174
Target:  5'- gGCCcgaGGCgaCCCCGCCCCCC-GACgCCa -3'
miRNA:   3'- aUGGa--CCG--GGGGCGGGGGGuCUGgGG- -5'
5139 3' -67.5 NC_001798.1 + 3646 0.74 0.120285
Target:  5'- gGCCUGGUCCagCGCCacguCCCCGGGCgCCa -3'
miRNA:   3'- aUGGACCGGGg-GCGG----GGGGUCUGgGG- -5'
5139 3' -67.5 NC_001798.1 + 40332 0.74 0.120285
Target:  5'- cACC--GCCCCCGCCCCCgCcGuCCCCa -3'
miRNA:   3'- aUGGacCGGGGGCGGGGG-GuCuGGGG- -5'
5139 3' -67.5 NC_001798.1 + 127335 0.74 0.120285
Target:  5'- gUACgUGGCCCCgagccugggCGUCCCCguGACCCg -3'
miRNA:   3'- -AUGgACCGGGG---------GCGGGGGguCUGGGg -5'
5139 3' -67.5 NC_001798.1 + 145938 0.74 0.123237
Target:  5'- aGCCgGGCCCCCccccaccacccGCCCaCCCAccuACCCCg -3'
miRNA:   3'- aUGGaCCGGGGG-----------CGGG-GGGUc--UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 47830 0.74 0.123237
Target:  5'- gGCCccGGCCCCgCGCgcgcuccuccacCCCCCggGGGCCCCg -3'
miRNA:   3'- aUGGa-CCGGGG-GCG------------GGGGG--UCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 93143 0.74 0.124436
Target:  5'- cGCCUGGCCUCggugauggcgggcgaCGCCgCCCuGGCCCUg -3'
miRNA:   3'- aUGGACCGGGG---------------GCGGgGGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 127834 0.74 0.125951
Target:  5'- gAUCUGGCgaccgucuuugggCCCCGCCCCgCCccACCCCg -3'
miRNA:   3'- aUGGACCG-------------GGGGCGGGG-GGucUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 75054 0.74 0.126256
Target:  5'- cGCCgaGGUCCCCGCCUCCUccccGACgCCCa -3'
miRNA:   3'- aUGGa-CCGGGGGCGGGGGGu---CUG-GGG- -5'
5139 3' -67.5 NC_001798.1 + 46406 0.74 0.126256
Target:  5'- gGCCggcagGGCCaCCGCCCCCCcggcggucgcgAGcGCCCCg -3'
miRNA:   3'- aUGGa----CCGGgGGCGGGGGG-----------UC-UGGGG- -5'
5139 3' -67.5 NC_001798.1 + 82320 0.73 0.129343
Target:  5'- gGCCcgguuGCCCgCCGCCCCCC--ACCCCa -3'
miRNA:   3'- aUGGac---CGGG-GGCGGGGGGucUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 117001 0.73 0.1325
Target:  5'- gACCUGGCgcgcgacgucCCCCugGUCCCCCcGGCCCUg -3'
miRNA:   3'- aUGGACCG----------GGGG--CGGGGGGuCUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 54610 0.73 0.1325
Target:  5'- gGCCgggGcGCCCCCGCgCCUCCc-GCCCCg -3'
miRNA:   3'- aUGGa--C-CGGGGGCG-GGGGGucUGGGG- -5'
5139 3' -67.5 NC_001798.1 + 25436 0.73 0.135727
Target:  5'- cGCgCUGcGCcgCCCCGCCCCCCGGcggcGCgCCCg -3'
miRNA:   3'- aUG-GAC-CG--GGGGCGGGGGGUC----UG-GGG- -5'
5139 3' -67.5 NC_001798.1 + 34811 0.73 0.135727
Target:  5'- gGCCccggGGCCCCCGCgCUCCgccggGGGCCCg -3'
miRNA:   3'- aUGGa---CCGGGGGCGgGGGG-----UCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.